Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02187 ATGGGTATCTCATGGAGTGGCAGAAGAAGAAACAATTACATCCAAAATCCACCACCTCCACTCCCACCTCCCCCTTACTATTACCCTCCCCAATCCCACCACCCTCCTCTTCCGCCGCCACCGCAGGGCTACTTCCTCCCTTCCACAACCACTTACACTCCAAACAGCAACAACTATGCCGCTCCCCCTCCCTTGGCTCCACCACCACAGCCGCCGCCGCCGCCGCAGACCCATTCCATCTCCTTCTATTACACCAACCAGAGTGCCTATCCCAACTACGCCAATTCCGCGCCCAATCGCCTTCAATACCAACCCTTCTACCACCCTCAGCCTAGCGTGTGGCCCGCCGCCACTGGCGCCCCTGCCTCCACTCCTCCGCCCTATGTCGATCACCAGGCCGCGAAGAAGATAAGAAACTATGTCAACGTCCACAAAGACACCCTGCGCCTCGAGGTTGACCAGGAAAACCCCGATCATCATCTCATTTCCTTCGTTTTCGATGCTGTCTACGATGGCAGCATTACTGTCTTCTACTTTGCCAAAGAAGAAGAAAAATGTAGATTTGTTCCATTATTTCCCGATGCATTTCAGCCAGTCAGAATACCCTTTCAGAAAGGAGTTGGACAGACATTTTCCCAGCCTTCAGGAACAGGAATTGACCTAGGCTTCTTTGAGTTGGATGATCTTTCAAAGCCCTCACCTGAAGAAGATGTCTTTCCTCTTGTAATATGTGCCGAAACAAGTTTGAAAACACCCTCAGAAGATGAAACTCTGGGTGATTCCGTGCTAGATGCATCACCTCACATGCAAATAACGCAAGGTGTCTTAGAGAAAAGTAATGGTGCTGGTCCTTTCCTGATAAAAGTAGTAAGGCAGATTTTGTGGATTGATGGTGTTCGATATGAGTTGAGAGAGTTATTTGGAATAGCAAGCTCATCCGCAGCTGATTTTGACGACAATGATCCCGGGAAGGAGTGTGTCATATGCATGACTGAACCAAAGGATACAGCTGTCTTACCTTGTCGACATATGTGTATGTGCGGTGAGTGTGCAAAAGCTCTGCGACTTCAATCTAATAAATGCCCTATATGCCGTCAGTCTATTGAGGAACTTATAGAGATCAAAGTAAACAATGACAATCAATAA 1146 0.4834 MGISWSGRRRNNYIQNPPPPLPPPPYYYPPQSHHPPLPPPPQGYFLPSTTTYTPNSNNYAAPPPLAPPPQPPPPPQTHSISFYYTNQSAYPNYANSAPNRLQYQPFYHPQPSVWPAATGAPASTPPPYVDHQAAKKIRNYVNVHKDTLRLEVDQENPDHHLISFVFDAVYDGSITVFYFAKEEEKCRFVPLFPDAFQPVRIPFQKGVGQTFSQPSGTGIDLGFFELDDLSKPSPEEDVFPLVICAETSLKTPSEDETLGDSVLDASPHMQITQGVLEKSNGAGPFLIKVVRQILWIDGVRYELRELFGIASSSAADFDDNDPGKECVICMTEPKDTAVLPCRHMCMCGECAKALRLQSNKCPICRQSIEELIEIKVNNDNQ* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02187 381 CDD mRING-HC-C3HC5_MGRN1-like 324 365 IPR045195 -
Phac6g02187 381 PANTHER MAHOGUNIN 70 377 IPR045194 GO:0061630
Phac6g02187 381 MobiDBLite consensus disorder prediction 60 78 - -
Phac6g02187 381 MobiDBLite consensus disorder prediction 15 45 - -
Phac6g02187 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 375 IPR013083 -
Phac6g02187 381 ProSiteProfiles Zinc finger RING-type profile. 326 365 IPR001841 -
Phac6g02187 381 FunFam probable E3 ubiquitin-protein ligase LOG2 310 375 - -
Phac6g02187 381 MobiDBLite consensus disorder prediction 1 80 - -
Phac6g02187 381 SMART ring_2 326 364 IPR001841 -
Phac6g02187 381 SUPERFAMILY RING/U-box 319 371 - -
Phac6g02187 381 Pfam Zinc finger, C3HC4 type (RING finger) 324 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02187 Phac-Chr6 21445826 21449757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02187 128 381 C3H Transcription Factor Family AT3G06140 62.353 2.38e-108 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02187 - - vra:106775674 617.461