Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02176 ATGGATCAAAACCAGAATGGTGAACCAGGAAGAGGAATTGGTTCAGCTCCAGCACAAGAAGCACGTAACAAGAACCAATATGAATCCAACCCCGTGATGTCACCTACTACAAATCCTCCTGTTCAGACCGTTGGTCCTTCTGTCCTTCTGAACCGACAGCAGCAACAAAAGGAGCAGTTGAAGGAAAAAGTCAAGAGCTTTTGGGCACAACAGCTGAAGCGAATTGAGGAGGGCACTGATTTAAGGAGTCGTCCTTGCATGCCTCTGTCGAGGATTAAGAAGATCATGAAGAGTGATGCAGATGTGAAGTTGGTTTCAGCTGAGACACCTGTGCTGTTTGCCAAGGCCTGTGAACTGTTCATAATGGAGCTCACAATGAAGGCTTGGGCTAACGCTGAGAACAAAAATAGGGGGAAAATCCAGAAGATTGACATTGCATCCGCAATCGCAGGGACTGAAGTGTTTGATTTTCTTGATGATATTGTTCCTATTCCTAGGGATGACACAAACACAATGATGCATCAAATGCTTGCAGGCAATGCTCCACCTCCAACTGATCATGTTCCTCCTCAACAGGTTACAAGCCCACCATTTCAGTCTGCTGCTTCTACAACTCTTCATCAAGTTCCTCACGCGCTGCAAACCTATCCTCTGATTCCAACTTCAACTGTCCCCCCCAATCAGCAAGACCCTTCTCCTGATTCAGATGATTGA 714 0.4622 MDQNQNGEPGRGIGSAPAQEARNKNQYESNPVMSPTTNPPVQTVGPSVLLNRQQQQKEQLKEKVKSFWAQQLKRIEEGTDLRSRPCMPLSRIKKIMKSDADVKLVSAETPVLFAKACELFIMELTMKAWANAENKNRGKIQKIDIASAIAGTEVFDFLDDIVPIPRDDTNTMMHQMLAGNAPPPTDHVPPQQVTSPPFQSAASTTLHQVPHALQTYPLIPTSTVPPNQQDPSPDSDD* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02176 237 MobiDBLite consensus disorder prediction 19 55 - -
Phac6g02176 237 FunFam Nuclear transcription factor Y subunit C 51 164 - -
Phac6g02176 237 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 51 170 - -
Phac6g02176 237 SUPERFAMILY Histone-fold 84 178 IPR009072 GO:0046982
Phac6g02176 237 Gene3D Histone, subunit A 47 163 IPR009072 GO:0046982
Phac6g02176 237 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 87 149 IPR003958 -
Phac6g02176 237 MobiDBLite consensus disorder prediction 192 237 - -
Phac6g02176 237 MobiDBLite consensus disorder prediction 179 237 - -
Phac6g02176 237 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02176 Phac-Chr6 21334668 21339832 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02176 64 198 CCAAT-HAP5 Transcription Factor Family AT1G56170 48.889 8.87e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Phac6g02176 CBFD_NFYB_HMF 2.4e-13 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02176 K08066 - vum:124832126 293.893