Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02150 ATGATGCAGCAGCCAGGACTCGGCATGGCTCCTCCCACCATGGGGCAGCAGCCACCGCAACAGTATCAGCAGCCGCCGCCGCAGCAGCAACCCTACGTCATGATGCCGCCGCAGCCCCAGGCGCCTCCGCCCATGTGGGCTCCTTCCACCCAGCCTTCGTCGCAGCAGCAGCCCACCAGCGTTGACGAGGTCCGGACCCTTTGGATCGGCGATTTGCAGTACTGGATGGATGAAAACTATCTCTACACCTGCTTTGCATCTACGGGCGAGGTTACATCTGTTAAAGTGATTCGTAATAAGCAAACTAGTCAATCAGAAGGTTATGGGTTTATTGAATTTAATAGTCGTGCTGCGGCCGAGAGAATTCTCCAAACATATAATGGGGCTATTATGCCAAATGGGGGGCAGAGTTTCAGGTTGAATTGGGCAAGTTTTAGTGCTGGTGAAAGGCGCCACGATGATTCTCCAGATTATACAATATTTGTTGGCGACTTGGCTGCAGATGTTACTGATTACTTGCTCCAAGAGACATTTAGGGCTCGTTACAGTTCAGTGAAGGGTGCAAAAGTTGTTATTGATAGGCTAACTGGTCGGACAAAGGGTTATGGCTTTGTTAGGTTCGCAGATGAGAGTGAACAAGTGAGGGCTATGACTGAGATGCAAGGGGTTCTTTGTTCAACAAGACCCATGAGAATTGGGCCAGCCAGTAACAAAACCCCTGCTACTCAGCCAAAAGCAACGTATCAGAATTCTCAAGCTCAAGGCACACAGAACGAAAATGATCCTAATAATACAACTATTTTTGTGGGCAATTTGGATGCTAATGTCAGCGATGATCATTTGAGGCAAGTTTTTAGCCAGTATGGAGAATTAGTTCATGTGAAGATACCAGCTGGCAAGCGATGTGGCTTTGTCCAATTCGCTGACAGGAGCTGTGCTGAAGAGGCACTTCGGATGTTAAATGGGACACTATTGGGTGGACAAAACGTTCGTCTGTCATGGGGACGCAGTCCTTCAAACAAACAGGGTCAGGCAGATCCAAACCAGTGGAATGGTGGTGGTGGATACTATGGGTATGCTCAAGGCTATGAAAACTATGGTTATGCTCCTGCTGGACAGGATCCCAACGTGTATGGCAGTTATCCGGGTTATCCTGGTTACCAACCTCCTCAGCAACAGCAGCAAATCGGATATAGTTGA 1200 0.4875 MMQQPGLGMAPPTMGQQPPQQYQQPPPQQQPYVMMPPQPQAPPPMWAPSTQPSSQQQPTSVDEVRTLWIGDLQYWMDENYLYTCFASTGEVTSVKVIRNKQTSQSEGYGFIEFNSRAAAERILQTYNGAIMPNGGQSFRLNWASFSAGERRHDDSPDYTIFVGDLAADVTDYLLQETFRARYSSVKGAKVVIDRLTGRTKGYGFVRFADESEQVRAMTEMQGVLCSTRPMRIGPASNKTPATQPKATYQNSQAQGTQNENDPNNTTIFVGNLDANVSDDHLRQVFSQYGELVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTLLGGQNVRLSWGRSPSNKQGQADPNQWNGGGGYYGYAQGYENYGYAPAGQDPNVYGSYPGYPGYQPPQQQQQIGYS* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02150 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 145 IPR000504 GO:0003723
Phac6g02150 399 SMART rrm1_1 66 141 IPR000504 GO:0003723
Phac6g02150 399 SMART rrm1_1 159 233 IPR000504 GO:0003723
Phac6g02150 399 SMART rrm1_1 266 333 IPR000504 GO:0003723
Phac6g02150 399 Gene3D - 246 346 IPR012677 -
Phac6g02150 399 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 56 341 - -
Phac6g02150 399 FunFam Polyadenylate-binding protein RBP45C 150 241 - -
Phac6g02150 399 FunFam Polyadenylate-binding protein RBP45 11 149 - -
Phac6g02150 399 Gene3D - 150 245 IPR012677 -
Phac6g02150 399 FunFam Polyadenylate-binding protein RBP45C 242 370 - -
Phac6g02150 399 MobiDBLite consensus disorder prediction 1 61 - -
Phac6g02150 399 Gene3D - 10 149 IPR012677 -
Phac6g02150 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 265 337 IPR000504 GO:0003723
Phac6g02150 399 MobiDBLite consensus disorder prediction 18 49 - -
Phac6g02150 399 SUPERFAMILY RNA-binding domain, RBD 28 145 IPR035979 GO:0003676
Phac6g02150 399 MobiDBLite consensus disorder prediction 379 399 - -
Phac6g02150 399 MobiDBLite consensus disorder prediction 229 263 - -
Phac6g02150 399 SUPERFAMILY RNA-binding domain, RBD 148 246 IPR035979 GO:0003676
Phac6g02150 399 MobiDBLite consensus disorder prediction 232 263 - -
Phac6g02150 399 CDD RRM1_SECp43_like 66 146 - -
Phac6g02150 399 CDD RRM2_SECp43_like 157 236 - -
Phac6g02150 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 237 IPR000504 GO:0003723
Phac6g02150 399 SUPERFAMILY RNA-binding domain, RBD 254 362 IPR035979 GO:0003676
Phac6g02150 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 223 IPR000504 GO:0003723
Phac6g02150 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 267 330 IPR000504 GO:0003723
Phac6g02150 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 132 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02150 Phac-Chr6 21165749 21169810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02150 64 344 Eukaryotic Initiation Factors Gene Family AT2G23350 26.481 7.02e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02150 - - gmx:100801562 605.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac6g02150 6 21165749 21169810 Phac6g02150 6 21165749 21169810 ECH