Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02109 ATGGCCACTTTAACCATTCTCCTAGTGCTCTCAGCATGCTTCCTACCCACCTTAGCTTCACCACTGAATAACAGAGATTCAACAAAGGAGTTCAATGCCCTCTCTCCTATTCCAAGCTATATCACCAAAAGTAGCCCTCAGAATGCTGTTACGAACACAATAGATTCATGCTGGCGAGCCAAAACAAATTGGGCTTCTAATCGCCAATCCTTGGCTGATTGTGCAATTGGCTTTGGCAAAGATGCCATAGGAGGAAAATTTGGTGATGTATATGAAGTCACTGACCCTTCTGACGACCCTGTAGACCCAAAACCTGGCACACTTCGTTATGGTGCAATCCAAACAGAACCCCTTTGGATAACTTTCGGCAAGGACATGGTTATCACGCTGAAGAATGAGCTCATGCTGAATAGCTACAAGACCATTGATGGGAGAGGAGCCAAAGTGGAGATCGCAAATGGGGCTTGCATTACGATACAAGGTGTTAGCCATGTAATCATACATGGAATTGGCATTCATGATTGTAAACCGGGTGAGGGTGGCATGGTTAGGAGCACTGCTGAGCATGTTGGGTATCGTGAAGGCTCTGATGGAGATGCCATTAGCATATTTGCCTCCTCCAATGTGTGGATTGACCATTGCTTTTTGGCTCGTTCCACCGATGGTCTCATTGATGTTATTCATGCCTCAACTGCAGTCACCATCTCTAACAATTACTTCACCCACCACGACAAAGTGATGCTGCTAGGGCACAGTGATGAATACAGCGCGGATAAAGTCATGAAAGTAACAGTAGCTTTTAACCGCTTTGCCAGTGACTTAATAGAAAGAATGCCAAGGGTGAGATTTGGCTATGCCCATGTGGTGAACAACCGGTATGACGAGTGGGTGATGTATGCCATTGGTGGCAGTGCCAACCCTACCATTTTCAGTGAAGGCAACTATTTTATGGCTTCAGATGATTCTGCTGCAAAACAGGTTACCAAGAGGGAAACTAGTGAAGGTTGGAATAATTGGAAATGGAGGAGTTTTGGAGATGAATTCTTAAATGGTGCTTATTTTGTGCCATCTGGGTATGGAAGTTGCACCCCATTGTATTCAGATGCTCAAACTTTTATAGCGGCCAAGGCATCCATGGTGCCCTTTTTAACTCTCAATGCAGGGCCACTTAACTGTTTTGGTATCTATGGTTCTCGACGTGTTACCAACAAACTGTCACTCAAAGAAATTAAAAGTCAAACCTCTGAAGTGAATGCACAACCTCATCTAACATCTATTAAATGCACTCACTCCATTGGTTGCCTCAGCCTTACAAGCATGGCAACCTCTTCCTTACTCCTCTTGTTTTCATGCTTCATACTACACCTTGCAAGTTCATCACAAAGTGCAGTTCTAAACAAAATAGACTCATGCAGGCTTGCCAAATCCAATTGGGCATCAAATCGCCAAGCCTTGGCTGATTGTGTCATTGGCTTTGGAAAAGATGCAATTGGAGGCAAATATGGAGCAATATATAAAGTCACAGATCCCTCTGATGATCCCATAAGCCCAAAACCAGGCACACTTCGCTATGCTGTGGTGCAAACACAACCCCTTTGGATCATTTTTGCCGAAGATATGACTATTAAGCTCAAGAACGAGCTTATCATGAATAGCTACAAGACCATTGATGGAAGAGGTGCTAAAGTGGAGATTACAGATGGGCCTTGCATTACAATACAAGGTGTTAGCCATGTTATCATCCATGGCATTAGCATCCATGATTGTAAGCCAAGCAAGGGTGGCCTTGTAATGAGCACCCCATCTCATGTTGGCCATCGCCAAGGCTCTGATGGAGATGGCATTAGCATATTTGCCTCCACAAATGTTTGGATTGATCACTGTTTCTTTGCTCGTTGTTTTGATGGCTTGATTGATGTTATTCACGCCTCAACTGCCATTACCATTTCTAACAATTACTTTACCCAGCATGACAAAGTTATGCTACTAGGACACAGCGACGTGTACACGGCAGATAAAATAATGAAAGTAACAATAGCCTTCAACCGATTTGCTAGTGGTCTAATTGAAAGGATGCCAAGGGTGAGATTTGGTTATGCCCATGTGGTGAACAACAAATATGATGGGTGGAAGATGTATGCAATAGGTGGCAGTTCTAACCCAACCATTCTAAGTGAAGCAAACTACTATGTAGCTCCGAATAACCCTGCTTCAAAACAGGTTACCAAGAGGGAAATGAAGGGAAAATTGAAGAGTTGGAAATGGAGGTCTTCTAAGGATGCATTCCTAAACGGTGCTTATTTTGTTCCATCAGGCTATGGAAGTTGTGACCCAAACTATTCACCTTCTCAATCTTTTACTGCTGCACCTGCTTCGTTGGTTCCCGCTATAACTCTAAACGCAGGTCCCCTAACTTGTGTTGTTGGTAAAGCATGTTAG 2439 0.4367 MATLTILLVLSACFLPTLASPLNNRDSTKEFNALSPIPSYITKSSPQNAVTNTIDSCWRAKTNWASNRQSLADCAIGFGKDAIGGKFGDVYEVTDPSDDPVDPKPGTLRYGAIQTEPLWITFGKDMVITLKNELMLNSYKTIDGRGAKVEIANGACITIQGVSHVIIHGIGIHDCKPGEGGMVRSTAEHVGYREGSDGDAISIFASSNVWIDHCFLARSTDGLIDVIHASTAVTISNNYFTHHDKVMLLGHSDEYSADKVMKVTVAFNRFASDLIERMPRVRFGYAHVVNNRYDEWVMYAIGGSANPTIFSEGNYFMASDDSAAKQVTKRETSEGWNNWKWRSFGDEFLNGAYFVPSGYGSCTPLYSDAQTFIAAKASMVPFLTLNAGPLNCFGIYGSRRVTNKLSLKEIKSQTSEVNAQPHLTSIKCTHSIGCLSLTSMATSSLLLLFSCFILHLASSSQSAVLNKIDSCRLAKSNWASNRQALADCVIGFGKDAIGGKYGAIYKVTDPSDDPISPKPGTLRYAVVQTQPLWIIFAEDMTIKLKNELIMNSYKTIDGRGAKVEITDGPCITIQGVSHVIIHGISIHDCKPSKGGLVMSTPSHVGHRQGSDGDGISIFASTNVWIDHCFFARCFDGLIDVIHASTAITISNNYFTQHDKVMLLGHSDVYTADKIMKVTIAFNRFASGLIERMPRVRFGYAHVVNNKYDGWKMYAIGGSSNPTILSEANYYVAPNNPASKQVTKREMKGKLKSWKWRSSKDAFLNGAYFVPSGYGSCDPNYSPSQSFTAAPASLVPAITLNAGPLTCVVGKAC* 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02109 812 SUPERFAMILY Pectin lyase-like 466 803 IPR011050 -
Phac6g02109 812 Gene3D - 465 805 IPR012334 -
Phac6g02109 812 Gene3D - 51 391 IPR012334 -
Phac6g02109 812 SUPERFAMILY Pectin lyase-like 52 389 IPR011050 -
Phac6g02109 812 PRINTS Pollen allergen Amb family signature 197 218 IPR018082 -
Phac6g02109 812 PRINTS Pollen allergen Amb family signature 299 318 IPR018082 -
Phac6g02109 812 PRINTS Pollen allergen Amb family signature 339 363 IPR018082 -
Phac6g02109 812 PRINTS Pollen allergen Amb family signature 277 296 IPR018082 -
Phac6g02109 812 PRINTS Pollen allergen Amb family signature 369 392 IPR018082 -
Phac6g02109 812 PRINTS Pollen allergen Amb family signature 74 91 IPR018082 -
Phac6g02109 812 PRINTS Pollen allergen Amb family signature 133 149 IPR018082 -
Phac6g02109 812 PRINTS Pollen allergen Amb family signature 97 122 IPR018082 -
Phac6g02109 812 Pfam Pectate lyase 132 316 IPR002022 -
Phac6g02109 812 Pfam Pectate lyase 545 730 IPR002022 -
Phac6g02109 812 PANTHER PECTATE LYASE 18-RELATED 40 392 IPR045032 GO:0030570
Phac6g02109 812 SMART amb_all 539 736 IPR002022 -
Phac6g02109 812 SMART amb_all 125 322 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02109 Phac-Chr6 20857315 20865524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02109 464 812 Polysaccharide Lyase AT4G22080 65.616 8.27e-173 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02109 K01728 - gmx:100799106 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac6g02109 6 20857315 20865524 Phac6g02109 6 20857315 20865524 ECH