Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02081 ATGGACGGTGTAGATGCCGGGGCTCCAAGGAGGAGGACTTTCAAGGAACGCTTCGGATTCATAGGCATCGGCTGTTGTGGGGCCACATGGGGCTTCCGTTCTGACGCGTTAACTTTCACCCACGGAGAACAGCAGCAGCAGCAGCAAGCGAACCAGCAGGGAACGGATCCGAGTCAAGGGCCGGGTCTGGAATGCGTGGATCCTGGTGCGGCGGGTTCCGGTATGAACCTGGCGGCGGCGCTTGCGGCTGAGCGGCAAATCCGGGGGCCGCAGGAGGAGGCGGCGGCAGCGAGGGCACCGGGGACGCCGTGGAGGGTGTCGCTGATGAGGCTGCTGGAGGAGAGCGAAGGAGGGGAGTCGGCGGCGGCGGTGGAGAAGGAAAAGGAGGAGGAGACGGGTGGTGTTGTGGGGAATGATTCGGTGTGCTGCGTGTGCATGGGGAGGAAGAAAGGCGCGGCGTTCATCCCATGTGGTCACACTTTTTGCAGGGTGTGTTCCAGGGAACTCTGGCTTAATCGAGGGTCTTGTCCCCTCTGCAATCGTTCCATCCTCGAGATTCTCGACATTTTCTAG 573 0.6161 MDGVDAGAPRRRTFKERFGFIGIGCCGATWGFRSDALTFTHGEQQQQQQANQQGTDPSQGPGLECVDPGAAGSGMNLAAALAAERQIRGPQEEAAAARAPGTPWRVSLMRLLEESEGGESAAAVEKEKEEETGGVVGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02081 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 190 IPR013083 -
Phac6g02081 190 ProSiteProfiles Zinc finger RING-type profile. 142 180 IPR001841 -
Phac6g02081 190 SMART ring_2 142 179 IPR001841 -
Phac6g02081 190 CDD RING-HC 142 179 - -
Phac6g02081 190 SUPERFAMILY RING/U-box 135 187 - -
Phac6g02081 190 MobiDBLite consensus disorder prediction 41 64 - -
Phac6g02081 190 MobiDBLite consensus disorder prediction 41 59 - -
Phac6g02081 190 Pfam Zinc finger, C3HC4 type (RING finger) 139 184 - -
Phac6g02081 190 PANTHER OS01G0917900 PROTEIN 9 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02081 Phac-Chr6 20660625 20662225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02081 1 190 C3H Transcription Factor Family AT4G22250 53.807 1.11e-60 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02081 - - pvu:PHAVU_006G145000g 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac6g02081 6 20660625 20662225 Phac6g02081 6 20660625 20662225 ECH