Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02053 ATGTCTGGCGCAGAAGAAGGCTCCGAGAATCCGTTGCGGTGGCCGTTTCAGTTCTTCGTCCGCACGGTGTCGACGGGGCCCAGCATAGTGATGACCGGTTACCCGGAAGAAACAGTGAAATCTGTCCTTGTGAAGATCGCGTGGGTGACGGGAATGCCGCTGAGAGAACTGAGAGTGATATACAAGGGAAAACAGCTTCAATTGGAGAAGGCTCTGATAGAGTGCGGCATCGAGAACGATTCCAATCTCAACATCGTTGGTCGCTTGCGCAGCGGATTGTACCCCGCGGCGTCGCGCACTATCGACTATGTGCTCTCCCTGCTCGCGCAAGCCTCCAGCAACACGTGGTGCGCGTGTGAGGCCTTGAAGACCGTGAAGGCTGTCTCCACGCGCCACTTCAGCCTCCCCGGTTTCGTGGAGCTCTTCGCGGTCTCTAATGCCCCCGCAATGTTGGCCTCGTTCTACCACTCGCCACGTGGCGCGGGTACCAGGCAACTTGCCGAGTCTTGCATAATCAATTTCATGAGTTGCGCGCGCGCGAAGAATTGGCAGAGTGTTTCCACTGGTGTGGTGATGGAGTTTTGCAAGCAGCTTAGACAGTTTGGGCGTGGAAGCCATGATCCTTTGTACCTTTCGTGTAGAAACACTTTGGGGCTTTTGTTGAATACAATTGGGGTTTCCTATGGTTCTGGGAGTGTGAAAAGAAGGGTTTCGCTTCACGATGTTTTTTCCTTTGTTCCTGAGCTTGTCGATGCGTTGTTAGTGGGCTTGGATAACAATAAACGGTGTCGTAGTACCATCACGAGGCCTTCGTCGGAAGAGGTTTCGGATTTGACAATATTCTTGGCCCCTTTGAGGAATGCAATTATTCTTCAGAAGCAATTGTTGGGGGGTTTTGTGATTGGTGATGATGGAAAATGTAGTGCGGAGAAGGAGGATGATCAGTTGCTTGCGGAAGAAGTTGATTATCTTCGGCTTGTGTTTGTTCGGTTATTGAGCAAAATGGATGAGTGTTTTCGCTGCATGGCGGAATGCTTGGCGGGCAAGGAATATGGTGGGAGGGGTTTTGTTCTCTATCCCTCATGGTCTGAATATCTTAGTATCTTGAAGGATTTGTATGATACTTCTAAGGTCTTTGATGATGCGGAGGAAATGTTTTGGACAGTTTTGAGGTTTCATAAGAATATGCTGTCTGCGCTTGTTGTTGGGTTTGTGAGGAGAGATGGTGATCATCGATGGGTTCTTGATAACAAGAGTGTGACCAATTTTGAGTGTAGGAGGCATTTGGCGATGATGCGGTTCCCTACTGCAAACGAAGACTTTGACATGTTTCATGAGATGCTTATTGACAGGTCTCAGGTACTGGTGGAGTCTTTTGAGTACATAAGACGAGCGTGCCCGGAGTCACTGCGTTCCGGTCTGTTTATAGAATTCAAAAATGAGGAAGCTACAGGACCAGGTGTGTTGCGGGAGTGGTTTGTTCTGGTGTGTCGAGGAATATTTGATCCACGACATGCTCTTTTTGTGGCTTGCCCGAATGACGGCAGGAGATTTTATCCAAATCCTGCATCTAAGGTACATCCTCGGCACCTTGAATACTTTAGGTTTGCTGGTCGAGTTATTGCATTGGCTTTGTTGAAAAAGGTGCAAGTTGGTATTGTTTTTGATCGTGTATTTTTCTTACAATTGGCTGGACTTCGTGTTACCTTAGAAGATATACGGGATACAGATCCTTGCTTGTACAGAAGCTGCAAGCAAATATTGGAGATGGATGCTGATTTCATTGATACGGATGCATTAGGACTGACATTTGTTAGAGAGTTGGAGGAATTAGGATGCAGGAAAGTTGTTGAGCTATGTCCTAATGGGAAAAGCATTATATTGAATAGTCAGAACAGGGAGCACTATGTTGATCTTCTCATACAGAATTGTTTTGTAACATCCATATCTGAGCAGGTGTCAAATTTTGCCCATGGTTTTGCTGATATTCTTTCCAGCTCAAAGCTTCAACAGTTCTTCCAATGTTTAGAGCTTGAAGATCTTGATTGGATGCTGCATGGGAGTGAAAATACAATCTCTATTGAAGATTGGAAGGCACATACCATGTACAAGGGCTATAAAGAGTCTGATTGTCAGATATCTTGGTTTTGGGAGATTGTTAGGAGAATGTCAGCTAAACAAAGGAGGGTTCTGATTTTCTTTTGGACATCTGTGAGATATTTACCAGTTGAAGGATTCTGTGGTTTGTCTTCCCCTCTATTCATTTGCAAGACATCAGAATCTAGCAATCGCCTGCCCTCATCTCACACATGTTTTTACCAGCTGTTTTTACCCAAGTATCCATCTATTGCTGTTATGCATGATCACTTTGGAGTCATCACTCAAGAACACATTGCTTGTAGTTTTGGTATTAGTTAA 2418 0.457 MSGAEEGSENPLRWPFQFFVRTVSTGPSIVMTGYPEETVKSVLVKIAWVTGMPLRELRVIYKGKQLQLEKALIECGIENDSNLNIVGRLRSGLYPAASRTIDYVLSLLAQASSNTWCACEALKTVKAVSTRHFSLPGFVELFAVSNAPAMLASFYHSPRGAGTRQLAESCIINFMSCARAKNWQSVSTGVVMEFCKQLRQFGRGSHDPLYLSCRNTLGLLLNTIGVSYGSGSVKRRVSLHDVFSFVPELVDALLVGLDNNKRCRSTITRPSSEEVSDLTIFLAPLRNAIILQKQLLGGFVIGDDGKCSAEKEDDQLLAEEVDYLRLVFVRLLSKMDECFRCMAECLAGKEYGGRGFVLYPSWSEYLSILKDLYDTSKVFDDAEEMFWTVLRFHKNMLSALVVGFVRRDGDHRWVLDNKSVTNFECRRHLAMMRFPTANEDFDMFHEMLIDRSQVLVESFEYIRRACPESLRSGLFIEFKNEEATGPGVLREWFVLVCRGIFDPRHALFVACPNDGRRFYPNPASKVHPRHLEYFRFAGRVIALALLKKVQVGIVFDRVFFLQLAGLRVTLEDIRDTDPCLYRSCKQILEMDADFIDTDALGLTFVRELEELGCRKVVELCPNGKSIILNSQNREHYVDLLIQNCFVTSISEQVSNFAHGFADILSSSKLQQFFQCLELEDLDWMLHGSENTISIEDWKAHTMYKGYKESDCQISWFWEIVRRMSAKQRRVLIFFWTSVRYLPVEGFCGLSSPLFICKTSESSNRLPSSHTCFYQLFLPKYPSIAVMHDHFGVITQEHIACSFGIS* 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02053 805 SMART hect_3 464 803 IPR000569 GO:0004842
Phac6g02053 805 Gene3D Hect, E3 ligase catalytic domain 688 803 - -
Phac6g02053 805 SUPERFAMILY Ubiquitin-like 15 94 IPR029071 -
Phac6g02053 805 Pfam HECT-domain (ubiquitin-transferase) 495 795 IPR000569 GO:0004842
Phac6g02053 805 Gene3D Hect, E3 ligase catalytic domains 448 680 - -
Phac6g02053 805 CDD HECTc 445 788 IPR000569 GO:0004842
Phac6g02053 805 ProSiteProfiles Ubiquitin domain profile. 16 92 IPR000626 GO:0005515
Phac6g02053 805 Gene3D - 15 94 - -
Phac6g02053 805 SUPERFAMILY Hect, E3 ligase catalytic domain 443 788 IPR035983 GO:0004842
Phac6g02053 805 Gene3D Hect, E3 ligase catalytic domain 566 648 - -
Phac6g02053 805 FunFam E3 ubiquitin-protein ligase UPL5 689 804 - -
Phac6g02053 805 ProSiteProfiles HECT domain profile. 466 805 IPR000569 GO:0004842
Phac6g02053 805 Pfam Ubiquitin family 19 90 IPR000626 GO:0005515
Phac6g02053 805 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 36 803 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02053 Phac-Chr6 20472263 20476501 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02053 17 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.364 4.53e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02053 - - var:108341618 884.019