Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g02026 ATGGGTCGTTCTCGTGGGAATTTTCATCACGCAGATGAGGATCCCAATCAGAGATCAAGGAGAAAAAAGAATGCCGCAAGTGGAGAAAACTCCGAATCTGGAGCTGCAGGCCAGGGAGCAGGTGAAGGGAAAAAGGCTCTGTACCACTGCAATTATTGTAATAAAGATATAACTGGAAAAATACGAATTAAGTGCGCCATGTGCCCAGATTTTGACTTGTGTATAGAGTGCTTTTCTGTTGGAGCTGAGGTGACACCTCACAAAAGCAACCATCCTTACAGGGTTATGGATAATTTGTCTTTCCCTCTTATTTGCCCAGACTGGAATGCTGATGATGAAATTTTGCTTCTTGAGGGAATTGAAATGTATGGCTTGGGAAACTGGACAGAAGTCGCTGAGCATGTTGGAACCAAAAACAAAGAATCATGCATAGAACACTATAAGAACATATACTTGAGCTCCCCATTCTTTCCTGTTCCGGACATGTCTCATGTGGTTGGGAAAAACAGAAAAGAACTTCTTGCCATGGCAAAGGGGCAGGGTGAAGACAAGAAAGGAATTTCCATGGGGGATCTTAGTTTAAAGGCAGAATCTCCCTTCTCTCCATCTAGAGCCAAGGTTGAAGATTCACATAAAGCTGGCTCTGCTAATCGTTTGTCTTCCAATCTGAATTCAGAGTTAGATTCTGGTCCCTCAGGTAACACACACTCTGCAGCTGGTGCTAACCAAAAGGCATCTCATGTGGCCAGAGGAAAAGGTGGTCCCGGAGTCATTAAAATGGAAGATTCTCAGATAGACAGAGATTTTGGAGGAAAGAAGCCAACTTCTTCAGGAAATGAAGGTCCTTCTTTAGTAGAATTGAGTGGTTATAATGCTAAAAGACAAGAATTCGATCCTGAATATGATAATGATGCTGAACAATTACTTGCTGAAATGGAGTTTAAGGATACCGATTCTGAGGAAGAGCGAGAGTTGAAACTTCGTGTATTGCGTTTATATTCAAAAAGGCTTGATGAAAGAAAGCGGAGGAAGGATTTCATTCTTGAAAGAAATTTGTTATACCCAAATCCATTGGAGAAGGATTTAACACCCGAGGAGAAGGCAATATGTCGAAAATACGATATATTCATGCGCTTTCATTCTAAAGAAGATCACGATGAATTGCTTCGAACAATACTCTTTGAGCATAGAAGTTGGAAAAAAATTCAAGAGCTTAAGGAAGCCCGGATAGCTGGTTGTCGCAATTCGGCTGAAGCTGATAGATATATCTCATCCAAGAGAAAGAGGGAAGCTGAAGAAAATGCTCGAAGGACAAGGACAAAAGAAAGTGCTCAGGTTGGCCCTAGCAATCAGGGAATTCCAAATGCATTGACTTCTCCAGATTCAGCTGGTAAGGATACAAGTGCAAGACCTGCAGGGCCAGCTACTTCTAGTTCTGTCAATGAGATGGATGTGATAGGATACTCTGGAGCAGATTTACTTTGTGAAGCTGAGAAAAGATTGTGCTGTGAGTTAAGATTGTCTCCAGCCATGTATCTAAAAATGCAAGAGCAACTGTCACTACAAATACTTGCTGGCACTGTCTCTGCAAAATCTGACGCTCATCAATTATTCAACAAGTTGGATGCCATAAAAATTGACAGAGTGTATGATATGCTCATTAAAAAGGGGATCGGTTTACCCTGA 1686 0.4164 MGRSRGNFHHADEDPNQRSRRKKNAASGENSESGAAGQGAGEGKKALYHCNYCNKDITGKIRIKCAMCPDFDLCIECFSVGAEVTPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWTEVAEHVGTKNKESCIEHYKNIYLSSPFFPVPDMSHVVGKNRKELLAMAKGQGEDKKGISMGDLSLKAESPFSPSRAKVEDSHKAGSANRLSSNLNSELDSGPSGNTHSAAGANQKASHVARGKGGPGVIKMEDSQIDRDFGGKKPTSSGNEGPSLVELSGYNAKRQEFDPEYDNDAEQLLAEMEFKDTDSEEERELKLRVLRLYSKRLDERKRRKDFILERNLLYPNPLEKDLTPEEKAICRKYDIFMRFHSKEDHDELLRTILFEHRSWKKIQELKEARIAGCRNSAEADRYISSKRKREAEENARRTRTKESAQVGPSNQGIPNALTSPDSAGKDTSARPAGPATSSSVNEMDVIGYSGADLLCEAEKRLCCELRLSPAMYLKMQEQLSLQILAGTVSAKSDAHQLFNKLDAIKIDRVYDMLIKKGIGLP* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g02026 561 CDD SANT 108 150 IPR001005 -
Phac6g02026 561 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
Phac6g02026 561 Pfam Myb-like DNA-binding domain 107 150 IPR001005 -
Phac6g02026 561 PIRSF Txn_adaptor_ADA2 35 560 IPR016827 GO:0003713|GO:0006357|GO:0035065
Phac6g02026 561 Gene3D - 475 559 IPR036388 -
Phac6g02026 561 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Phac6g02026 561 SMART zz_5 44 89 IPR000433 GO:0008270
Phac6g02026 561 SUPERFAMILY RING/U-box 48 110 - -
Phac6g02026 561 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 155 IPR017930 -
Phac6g02026 561 CDD ZZ_ADA2 48 96 IPR041983 -
Phac6g02026 561 FunFam Transcriptional adapter 2 475 559 - -
Phac6g02026 561 MobiDBLite consensus disorder prediction 193 260 - -
Phac6g02026 561 SMART sant 104 153 IPR001005 -
Phac6g02026 561 FunFam Transcriptional adapter 2 101 153 - -
Phac6g02026 561 SUPERFAMILY Homeodomain-like 467 558 IPR009057 -
Phac6g02026 561 MobiDBLite consensus disorder prediction 214 242 - -
Phac6g02026 561 MobiDBLite consensus disorder prediction 1 42 - -
Phac6g02026 561 MobiDBLite consensus disorder prediction 424 480 - -
Phac6g02026 561 FunFam Transcriptional adapter 41 96 - -
Phac6g02026 561 ProSiteProfiles SWIRM domain profile. 474 561 IPR007526 GO:0005515
Phac6g02026 561 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
Phac6g02026 561 MobiDBLite consensus disorder prediction 1 27 - -
Phac6g02026 561 MobiDBLite consensus disorder prediction 266 285 - -
Phac6g02026 561 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Phac6g02026 561 Pfam Zinc finger, ZZ type 46 88 IPR000433 GO:0008270
Phac6g02026 561 Gene3D - 102 153 - -
Phac6g02026 561 MobiDBLite consensus disorder prediction 424 440 - -
Phac6g02026 561 MobiDBLite consensus disorder prediction 441 480 - -
Phac6g02026 561 SUPERFAMILY Homeodomain-like 101 154 IPR009057 -
Phac6g02026 561 Gene3D - 41 96 IPR043145 -
Phac6g02026 561 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 48 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g02026 Phac-Chr6 20306293 20311676 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g02026 1 559 EF-hand Containing Proteins AT3G07740 46.967 5.98e-160 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phac6g02026 Myb_DNA-binding 6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g02026 K11314 - gmx:100811887 971.844