Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01880 ATGGGGGATCAGGGTGTTTTAGGTGCTAATGTTGGAAGAGAGGAGGAGGAAGATGAGTTTTGCAGTTGTTGTGGAGATGAAGACGAGGAAGCTTGGAAAGAGACTGAGGAGGCTGTGGTGGAAGGGTTGAAGGACGAGCTTGATGAATTTTCGGTGAAAATGTTCTTCAAGGGGTTGTCAATGGCTGGGGTTGAAAATTCAAGTTCTGGGTTTTCTGGAATTGGAGTTGTCATGGAAAGGTCACCAGGGCTTCCTGCTATAAGGGTGCAGAAAAAACTTGACTTTTGTGCGGAGGAGTCTGTGGTTGACTATTTGGCACTCTTGGATGGCTTGCTGGAAGCTGAGCGGAAAAAGATCCGCAGGGTTTATGCTTTTACAGATTCTGAGTTGTTGCATGATCAGATAACATTTGGGGAAAAAATGGACATGCCTCTTTTGATGGCATTGAGAGAAAGGATTCTGGAACTTGCCAATAATTTTGAAGATTTCGTTTTAAAGCTTATACCCTCTACTGATCTTGAGCAGCCACTGCATTTGGCCAAAGTAGCTATTGGACTTGTCACATTCCCTGTAAATGGTGAGACATTGCTTAAGAACTGTTCTATTTGCTGTGATGACAAGCCAGTGCTAATTATGATTACCCTGAAATGTTCGCACACATTCTGTTCACATTGCTTGAGGGCCTATGCTGATGGTAAAGTACAATCATCTCAAGTTCCTATAAGATGCCCTCAACCAGGGTGCAAGTATTGCATCTCTGCAACTGAGTGCAGGTCTTTTCTTCCATTCACCTCCTTTGAATCACTGGAGAAAGCCCTTTCCCAAGCAAATATTGACCATTCAGATAGAATTTATTGTCCATTTCCAAATTGTTCCGTTCTCCTTGATTCTCATGAATGCTTATCAGCTACGGCAAGTTCATCTAGTCAGTCTGACAATTCTTGTATCGAGTGTCCTGTTTGTAAGAGGTTTATCTGTGTGGAGTGTAAGGTTCCTTGGCATTCTTCTATGAGTTGTGTAGAATTCCAGAATCTGCCAGAGGAGGAGAGAGATGCTTCTGACATTACCTTGCACCGTCTTGCTCAAAATAAGAGGTGGAAGCGTTGTCAGCAATGTCATACAATGATTGAACTTACTCAAGGCTGTTACCACATGACGTGCTGGTGTGGTCACCAGTTCTGCTATTCTTGTGGTGCGGAATACCGAGAAGGGCAACAGACATGCCAGTGTGCATATTGGGATGAAAATAACTCAGAAGACTCAGTGGCACACTCTCTTCAAGAATCAGAACAATGGGCATGGGAGACATTCAACTCTCTCTCCATGATCGTGGATGCATACTCAGACCAGGAACGATCCCAGCTTGCGCTTATTCAGAGGTTTCTAGCCGGGGGTTTCAGTCTCAGTGACCACAATCCTTACCAGTCTCCTCCTCGCTGTACAGATTCCTATGTAGACCCCATGAAGGATCTACATCAACTTCCATGGCTTGAGAGATTTGTGTCTGTCATAAGTGACAACTACTATGAAGATTACATTCAATGA 1545 0.4395 MGDQGVLGANVGREEEEDEFCSCCGDEDEEAWKETEEAVVEGLKDELDEFSVKMFFKGLSMAGVENSSSGFSGIGVVMERSPGLPAIRVQKKLDFCAEESVVDYLALLDGLLEAERKKIRRVYAFTDSELLHDQITFGEKMDMPLLMALRERILELANNFEDFVLKLIPSTDLEQPLHLAKVAIGLVTFPVNGETLLKNCSICCDDKPVLIMITLKCSHTFCSHCLRAYADGKVQSSQVPIRCPQPGCKYCISATECRSFLPFTSFESLEKALSQANIDHSDRIYCPFPNCSVLLDSHECLSATASSSSQSDNSCIECPVCKRFICVECKVPWHSSMSCVEFQNLPEEERDASDITLHRLAQNKRWKRCQQCHTMIELTQGCYHMTCWCGHQFCYSCGAEYREGQQTCQCAYWDENNSEDSVAHSLQESEQWAWETFNSLSMIVDAYSDQERSQLALIQRFLAGGFSLSDHNPYQSPPRCTDSYVDPMKDLHQLPWLERFVSVISDNYYEDYIQ* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01880 514 Gene3D - 54 186 IPR036397 GO:0003676
Phac6g01880 514 SUPERFAMILY RING/U-box 352 416 - -
Phac6g01880 514 Coils Coil 33 53 - -
Phac6g01880 514 SMART ibrneu5 349 408 IPR002867 GO:0008270
Phac6g01880 514 SMART ibrneu5 267 339 IPR002867 GO:0008270
Phac6g01880 514 CDD Rcat_RBR_unk 365 401 - -
Phac6g01880 514 SMART ring_2 369 410 IPR001841 -
Phac6g01880 514 SMART ring_2 200 251 IPR001841 -
Phac6g01880 514 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 280 IPR013083 -
Phac6g01880 514 CDD BRcat_RBR_unk 281 342 - -
Phac6g01880 514 Pfam Reverse transcriptase-like 63 169 IPR002156 GO:0003676|GO:0004523
Phac6g01880 514 ProSitePatterns Zinc finger RING-type signature. 217 226 IPR017907 -
Phac6g01880 514 Pfam IBR domain, a half RING-finger domain 275 339 IPR002867 GO:0008270
Phac6g01880 514 Pfam IBR domain, a half RING-finger domain 359 408 IPR002867 GO:0008270
Phac6g01880 514 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 120 461 IPR031127 GO:0004842|GO:0016567
Phac6g01880 514 Gene3D - 337 462 - -
Phac6g01880 514 FunFam RBR-type E3 ubiquitin transferase 195 280 - -
Phac6g01880 514 ProSiteProfiles Zinc finger RING-type profile. 200 244 IPR001841 -
Phac6g01880 514 FunFam RBR-type E3 ubiquitin transferase 52 187 - -
Phac6g01880 514 FunFam RBR-type E3 ubiquitin transferase 337 462 - -
Phac6g01880 514 ProSiteProfiles TRIAD supradomain profile. 196 414 IPR044066 -
Phac6g01880 514 SUPERFAMILY RING/U-box 198 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01880 Phac-Chr6 19518965 19524710 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01880 51 399 C3H Transcription Factor Family AT2G19610 25.627 1.00e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01880 - - gmx:100783040 973.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac6g01880 6 19518965 19524710 Phac6g01880 6 19518965 19524710 ECH