Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01878 ATGGACTATCTTAGTGGGCATAATCTCTCCGTTCCTAGGGATATTTTACAATGTATGGATGTGGTGGTGAAAGAGAATCCTGCTAGGCGAACTGTTTCTGTAGGAGGACGCTACTATCCCACAAATCCTCCTGTAGTGATGAAGGATCTTCACCATGGGATAATTGCTGTTGGGGGATTTCAGCATAGTTTAAAGCCTACATCTCAGGGTCTGTCCTTATGTGTAGACTACTCGGTTTTGGCTTTTCGGAAGGGAATGCCAGTCTTGGATTTCTTACATGAGTGTATTGATAACTTTAAATTGGATGAATTTGAAAAATTTAGGAAATGTGTTGAGGGCGCACTTGTTGGATTGAAAGTCAATGTGACTCATCGTAAATGCAATCGGAAATACATTATTTCAAGATTAACTCCTATGATTACAAGGTATGTCGCTTTTCCCATTGACAATACCGGTGAATGGAATCGCCCAAAGGATGTTAGTCTTCTTACCTTTTTTAAAGACAAATATGGCAAGGAAATTATGTACAAAGATATTCCTTGTCTAGATTTAGGGAAAGACAAGAAGAACTATGTACCCATGGAATTCTGTGTTCTAGTTGAGGGCCAAAGATATCCCAGAGACCGTCTGGATAGTATTTCTGCAAATACATTGAAAACAATGTCACTAGCTCACCCAAATGAGAGGGAGGGTGCAATACATAAGATGGTGCAGTCTAGTGATGGACCTTGCAGCGGTGGATTTACTCAAAATTTTGGAATGAGTGTCAAGACAACTATGACAACTATTGTAGCACGTGTACTTGGTCCTCCAGAATTAAAGTTAGGTGATCCAAATGGAAAGATCATTAAATTAACAGTGGATCTGGAGAAATGTCACTGGAATCTTGCTGGAAGGTCAATGGTGGAAGGTAAACCAGTTGATAATTGGGGCATTATTGATTTCACTAGTTTTGGGCCATCCAAGTACAAATTAAGAGGCAAGGATTTCACTCAAAAGCTTATAGGCAAATACAAGAAATTGGGTATATACATGCAGGAGCCCATTTGGTATGAAGAATCTTCAATGAAGATACTTGCGTCTTATAATTTGCTATCTGAATTACTTGAGAAAATTAAGAACATTTGTAAATATAACCACGTACACCTGCAATTTCTTCTGTGTGTAATGGCTAAAAAAAGTCCTGGTTACAAGTACCTGAAATGGATTTCTGAGACCAAACTTGGGATAGTAACACAATGCTGCTTGTCTAATGGTGCTAATGAAGCAGAGGACAAATTTTATACTAATCTGGCTCTCAAGATCAATGCCAAACTTGGAGGCAGTAACGTGGAGCTTAGTAATGGGCTCCCTTACTCTGTGGGTGAAGAACATGTGATGTTTTTAGGGGCTGATGTCAACCATCCTGGTTATCAAGACACCAGGAGTCCATCAATTGCTGCTGTGGTCGCTACTGTTAACTGGCCTGCTGCAAATCGTTATGCAGCACGTATATGCCCACAATACAATCGAATTGAGAAAATACTGAGCTTTGGAGATGTTTGCCTTGAGCTTGTTTCATGCTATAGGAGGATGAATGGAGTTAGGCCTGAAAGAATTGTTATTTTTCGTGATGGGGTGAGCGAGTACCAGTTTGACATGGTTCTTAACGAAGAACTGCTTGATTTGAAGAGAGTATTTCAAAGAGTAAACTACTTTCCAACAATCACTCTTATTGTAGCACAAAAACGACATCAAACTCGATTTTTCCCAGAGGGCTGGAGGGATGGATCTTCGAGTGGCAATATTTTACCAGGAACAGTTGTGGACACAAAAGTTATACATCCTTTTGAGTTTGACTTCTACCTTTGTAGTTACTATGGAAACCTTGGTACAAGCAAGCCTACTCATTACCATGTTTTATGGGACGAGCACAAGTTTACATCTGATGAATTGCAGAAGCTCATATACCATATGTGCTTCACCTTTGCCAAGTGCACTAAACCTGTATCTTTAGTTCCTCCTGTGTATTACGCTGACCTTGCTGCTTATAGAGGACGATTATACCATGAAGCAAGGATTGGGATGCAATCTCCAAACTCAACAAAAGATGCTTCCTCACTTTCACGAACCACCTCATTTGAACAAGGATTTTACTCACTGCATGCTGACCTGGAAAACATAATGTTCTTTATCTAA 2178 0.3985 MDYLSGHNLSVPRDILQCMDVVVKENPARRTVSVGGRYYPTNPPVVMKDLHHGIIAVGGFQHSLKPTSQGLSLCVDYSVLAFRKGMPVLDFLHECIDNFKLDEFEKFRKCVEGALVGLKVNVTHRKCNRKYIISRLTPMITRYVAFPIDNTGEWNRPKDVSLLTFFKDKYGKEIMYKDIPCLDLGKDKKNYVPMEFCVLVEGQRYPRDRLDSISANTLKTMSLAHPNEREGAIHKMVQSSDGPCSGGFTQNFGMSVKTTMTTIVARVLGPPELKLGDPNGKIIKLTVDLEKCHWNLAGRSMVEGKPVDNWGIIDFTSFGPSKYKLRGKDFTQKLIGKYKKLGIYMQEPIWYEESSMKILASYNLLSELLEKIKNICKYNHVHLQFLLCVMAKKSPGYKYLKWISETKLGIVTQCCLSNGANEAEDKFYTNLALKINAKLGGSNVELSNGLPYSVGEEHVMFLGADVNHPGYQDTRSPSIAAVVATVNWPAANRYAARICPQYNRIEKILSFGDVCLELVSCYRRMNGVRPERIVIFRDGVSEYQFDMVLNEELLDLKRVFQRVNYFPTITLIVAQKRHQTRFFPEGWRDGSSSGNILPGTVVDTKVIHPFEFDFYLCSYYGNLGTSKPTHYHVLWDEHKFTSDELQKLIYHMCFTFAKCTKPVSLVPPVYYADLAAYRGRLYHEARIGMQSPNSTKDASSLSRTTSFEQGFYSLHADLENIMFFI* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01878 725 ProSiteProfiles Piwi domain profile. 385 684 IPR003165 GO:0003676
Phac6g01878 725 Gene3D - 267 447 - -
Phac6g01878 725 SMART Piwi_a_2 385 683 IPR003165 GO:0003676
Phac6g01878 725 SUPERFAMILY Ribonuclease H-like 369 684 IPR012337 -
Phac6g01878 725 Pfam PAZ domain 90 216 IPR003100 GO:0005515
Phac6g01878 725 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 3 685 - -
Phac6g01878 725 Pfam Argonaute linker 1 domain 36 84 IPR014811 -
Phac6g01878 725 CDD PAZ_argonaute_like 86 200 - -
Phac6g01878 725 SMART DUF1785_2 32 85 IPR014811 -
Phac6g01878 725 ProSiteProfiles PAZ domain profile. 86 201 IPR003100 GO:0005515
Phac6g01878 725 SMART PAZ_2_a_3 86 218 IPR003100 GO:0005515
Phac6g01878 725 Gene3D paz domain 80 205 - -
Phac6g01878 725 SUPERFAMILY PAZ domain 81 239 IPR036085 GO:0005515
Phac6g01878 725 Gene3D - 452 725 IPR036397 GO:0003676
Phac6g01878 725 CDD Piwi_ago-like 248 682 IPR045246 -
Phac6g01878 725 Pfam Piwi domain 386 680 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01878 Phac-Chr6 19503536 19508803 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01878 3 684 Eukaryotic Initiation Factors Gene Family AT1G48410 37.902 3.59e-138 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01878 K11593 - gmx:100783571 1318.14