Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01877 ATGGAAACCGGTGCTGCCGGTACCCAAGCCCAACCAAGCGGTTACACCGCAAGAGAAATTCCGCCACCGCAACTGCCTGAGGAACCGAATCTGCGGCCAGAATGCCGACGATCAAGTGGAACTGAGCCGGACCTCATTCTGCAACCTGAATGGCGCCGTCCAAGGCCAACCGCTCCTCCTTCCGAACCTTCCAACCGTGGCGGCGAAGAGGAAATTCTTCTCCAACCACAATGGAGGCGCTCGAAGCCAACCGCGAGCGCGAGTGCGAGTTCTAGTGTTTGGGAGCCTGAATGGAGACGATCGAGAACAGGTTCAACGGCATTTCCGTGGAACCAAAATTACAGTGTTCGCAAACCTAGTGCGTCGAGTTCCGGTGGCGTTGAAAGACGCGGTGACCCTAACGACCTTTGGCGAGCTCTTCCGGCTGCAGATTCTGTCATTCCCAAGCTGGAAAAACTTCAAATATCAAAACAGTTACCTACATCAAGTTGTACCCTTGAAAAAGAGGATAAAATATCACCTATTCAGAGACCTGATAATGGTGGCACGATAACAATTCTAACTAGCAGACTCCGTGTCAATCATTTTCCTGTTAAGTTTGATCCAGAGCGTACAATAATGCATTATAGTGTTGGTGTCAAGCCTAAGGTTTCTTCAAAATTTGGGCAGCCTCAGAGATTATCGAAGTCTGATCTATCCATGATCAGAGAGAAACTGTTTTCTGATGATCCTGCGAGATTGCCCTTGGAGATGACTGCACATGACGGTGCACAAAATATTTATAGTGCAGTACAGTTACCAGAAGAGACCTTTACTGTGGAGATCACTGATGGAGAGGACGAAAAGATCATTTCATATAGTGTTACCTTAACTCTTGTTAATAAACTCAGGCTTTGCAAGTTAATGGACTATCTTAGTGGGCATAATCTCTCCGTTCCTAGGGATATTTTACAATGTATGGATGTGGTGGTGAAAGAGAATCCTGCTAGGCGAACTGTTTCTGTAGGAGGACGCTACTATCCCACAAATCCTCCTGTAGTGATGAAGGATCTTCACCATGGGATAATTGCTGTTGGGGGATTTCAGCATAGTTTAAAGCCTACATCTCAGGGTCTGTCCTTATGTGTAGACTACTCGGTTTTGGCTTTTCGGAAGGGAATGCCAGTCTTGGATTTCTTACATGAGTGTATTGATAACTTTAAATTGGATGAATTTGAAAAATTTAGGAAATGTGTTGAGGGCGCACTTGTTGGATTGAAAGTCAATGTGACTCATCGTAAATGCAATCGGAAATACATTATTTCAAGATTAACTCCTATGATTACAAGGTATGTCGCTTTTCCCATTGACAATACCGGTGAATGGAATCGCCCAAAGGATGTTAGTCTTCTTACCTTTTTTAAAGACAAATATGGCAAGGAAATTATGTACAAAGATATTCCTTGTCTAGATTTAGGGAAAGACAAGAAGAACTATGTACCCATGGAATTCTGTGTTCTAGTTGAGGGCCAAAGATATCCCAGAGACCGTCTGGATAGTATTTCTGCAAATACATTGAAAACAATGTCACTAGCTCACCCAAATGAGAGGGAGGGTGCAATACATAAGATGGTGCAGTCTAGTGATGGACCTTGCAGCGGTGGATTTACTCAAAATTTTGGAATGAGTGTCAAGACAACTATGACAACTATTGTAGCACGTGTACTTGGTCCTCCAGAATTAAAGTTAGGTGATCCAAATGGAAAGATCATTAAATTAACAGTGGATCTGGAGAAATGTCACTGGAATCTTGCTGGAAGGTCAATGGTGGAAGGTAAACCAGTTGATAATTGGGGCATTATTGATTTCACTAGTTTTGGGCCATCCAAGTACAAATTAAGAGGCAAGGATTTCACTCAAAAGCTTATAGGCAAATACAAGAAATTGGGTATATACATGCAGGAGCCCATTTGGTATGAAGAATCTTCAATGAAGATACTTGCGTCTTATAATTTGCTATCTGAATTACTTGAGAAAATTAAGAACATTTGTAAATATAACCACGTACACCTGCAATTTCTTCTGTGTGTAATGGCTAAAAAAAGTCCTGGTTACAAGTACCTGAAATGGATTTCTGAGACCAAACTTGGGATAGTAACACAATGCTGCTTGTCTAATGGTGCTAATGAAGCAGAGGACAAATTTTATACTAATCTGGCTCTCAAGATCAATGCCAAACTTGGAGGCAGTAACGTGGAGCTTAGTAATGGGCTCCCTTACTCTGTGGGTGAAGAACATGTGATGTTTTTAGGGGCTGATGTCAACCATCCTGGTTATCAAGACACCAGGAGTCCATCAATTGCTGCTGTGGTCGCTACTGTTAACTGGCCTGCTGCAAATCGTTATGCAGCACGTATATGCCCACAATACAATCGAATTGAGAAAATACTGAGCTTTGGAGATGTTTGCCTTGAGCTTGTTTCATGCTATAGGAGGATGAATGGAGTTAGGCCTGAAAGAATTGTTATTTTTCGTGATGGGGTGAGCGAGTACCAGTTTGACATGGTTCTTAACGAAGAACTGCTTGATTTGAAGAGAGTATTTCAAAGAGTAAACTACTTTCCAACAATCACTCTTATTGTAGCACAAAAACGACATCAAACTCGATTTTTCCCAGAGGGCTGGAGGGATGGATCTTCGAGTGGCAATATTTTACCAGGAACAGTTGTGGACACAAAAGTTATACATCCTTTTGAGTTTGACTTCTACCTTTGTAGTTACTATGGAAACCTTGGTACAAGCAAGCCTACTCATTACCATGTTTTATGGGACGAGCACAAGTTTACATCTGATGAATTGCAGAAGCTCATATACCATATGTGCTTCACCTTTGCCAAGTGCACTAAACCTGTATCTTTAGTTCCTCCTGTGTATTACGCTGACCTTGCTGCTTATAGAGGACGATTATACCATGAAGCAAGGATTGGGATGCAATCTCCAAACTCAACAAAAGATGCTTCCTCACTTTCACGAACCACCTCATTTGAACAAGGATTTTACTCACTGCATGCTGACCTGGAAAACATAATGTTCTTTATCTAA 3081 0.4213 METGAAGTQAQPSGYTAREIPPPQLPEEPNLRPECRRSSGTEPDLILQPEWRRPRPTAPPSEPSNRGGEEEILLQPQWRRSKPTASASASSSVWEPEWRRSRTGSTAFPWNQNYSVRKPSASSSGGVERRGDPNDLWRALPAADSVIPKLEKLQISKQLPTSSCTLEKEDKISPIQRPDNGGTITILTSRLRVNHFPVKFDPERTIMHYSVGVKPKVSSKFGQPQRLSKSDLSMIREKLFSDDPARLPLEMTAHDGAQNIYSAVQLPEETFTVEITDGEDEKIISYSVTLTLVNKLRLCKLMDYLSGHNLSVPRDILQCMDVVVKENPARRTVSVGGRYYPTNPPVVMKDLHHGIIAVGGFQHSLKPTSQGLSLCVDYSVLAFRKGMPVLDFLHECIDNFKLDEFEKFRKCVEGALVGLKVNVTHRKCNRKYIISRLTPMITRYVAFPIDNTGEWNRPKDVSLLTFFKDKYGKEIMYKDIPCLDLGKDKKNYVPMEFCVLVEGQRYPRDRLDSISANTLKTMSLAHPNEREGAIHKMVQSSDGPCSGGFTQNFGMSVKTTMTTIVARVLGPPELKLGDPNGKIIKLTVDLEKCHWNLAGRSMVEGKPVDNWGIIDFTSFGPSKYKLRGKDFTQKLIGKYKKLGIYMQEPIWYEESSMKILASYNLLSELLEKIKNICKYNHVHLQFLLCVMAKKSPGYKYLKWISETKLGIVTQCCLSNGANEAEDKFYTNLALKINAKLGGSNVELSNGLPYSVGEEHVMFLGADVNHPGYQDTRSPSIAAVVATVNWPAANRYAARICPQYNRIEKILSFGDVCLELVSCYRRMNGVRPERIVIFRDGVSEYQFDMVLNEELLDLKRVFQRVNYFPTITLIVAQKRHQTRFFPEGWRDGSSSGNILPGTVVDTKVIHPFEFDFYLCSYYGNLGTSKPTHYHVLWDEHKFTSDELQKLIYHMCFTFAKCTKPVSLVPPVYYADLAAYRGRLYHEARIGMQSPNSTKDASSLSRTTSFEQGFYSLHADLENIMFFI* 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01877 1026 SUPERFAMILY PAZ domain 382 540 IPR036085 GO:0005515
Phac6g01877 1026 Gene3D paz domain 381 506 - -
Phac6g01877 1026 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 190 986 - -
Phac6g01877 1026 SMART DUF1785_2 333 386 IPR014811 -
Phac6g01877 1026 MobiDBLite consensus disorder prediction 1 15 - -
Phac6g01877 1026 Gene3D - 753 1026 IPR036397 GO:0003676
Phac6g01877 1026 SMART PAZ_2_a_3 387 519 IPR003100 GO:0005515
Phac6g01877 1026 CDD Piwi_ago-like 549 983 IPR045246 -
Phac6g01877 1026 CDD PAZ_argonaute_like 387 501 - -
Phac6g01877 1026 SUPERFAMILY Ribonuclease H-like 670 985 IPR012337 -
Phac6g01877 1026 Pfam N-terminal domain of argonaute 190 324 IPR032474 -
Phac6g01877 1026 Gene3D - 568 748 - -
Phac6g01877 1026 Pfam PAZ domain 391 517 IPR003100 GO:0005515
Phac6g01877 1026 MobiDBLite consensus disorder prediction 1 134 - -
Phac6g01877 1026 Pfam Argonaute linker 1 domain 337 385 IPR014811 -
Phac6g01877 1026 SMART Piwi_a_2 686 984 IPR003165 GO:0003676
Phac6g01877 1026 Pfam Piwi domain 687 981 IPR003165 GO:0003676
Phac6g01877 1026 ProSiteProfiles Piwi domain profile. 686 985 IPR003165 GO:0003676
Phac6g01877 1026 MobiDBLite consensus disorder prediction 79 122 - -
Phac6g01877 1026 ProSiteProfiles PAZ domain profile. 387 502 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01877 Phac-Chr6 19503536 19508803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01877 191 985 Eukaryotic Initiation Factors Gene Family AT1G48410 36.504 5.45e-146 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01877 K11593 - gmx:100783571 1773.83