Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01856 ATGAAGGAAAGTGGTGGTAGAAAGCAGGGTGCAGCCTCACCCTGTGCTGCATGCAAGCTTCTGAGAAGAAGGTGTGCTCAGGATTGTGTTTTTGCTCCATATTTCCCAGCAGATGAACCTCAAAAGTTTGCAAATGTGCACAAGGTGTTTGGTGCTAGCAATGTCAACAAGATGCTTCAGGATCTACCAATGCATCAAAGAGGGGATGCAGTGAGTAGCATGGTGTATGAGGCGAATGCCAGAGTTCGAGACCCCGTTTATGGGTGTGTTGGGGCCATCTCTTCTCTTCAGCAACAGATTGATGTGCTACAGACCCAATTGGCCCTGGCCCAGGCTGAGGTGGCCCACCTTAGGGTGAGACAAACTAGGCCTTTTTCAAGTTATGGGCCTAGACCCAATAGCCCAACCAATAGTGGGTTCCCATCACCGAAGACCTTGGACTCACATGCCAAGCCTATTTTTGACATGGACATGGTGATGGACCAGGCCAGCTATGGGAGTTCAATGTGGTGA 513 0.499 MKESGGRKQGAASPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQDLPMHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQAEVAHLRVRQTRPFSSYGPRPNSPTNSGFPSPKTLDSHAKPIFDMDMVMDQASYGSSMW* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01856 170 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
Phac6g01856 170 Coils Coil 93 120 - -
Phac6g01856 170 MobiDBLite consensus disorder prediction 126 144 - -
Phac6g01856 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 131 - -
Phac6g01856 170 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Phac6g01856 170 MobiDBLite consensus disorder prediction 123 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01856 Phac-Chr6 19406231 19410234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01856 1 170 AS2 family AT1G31320 77.193 3.19e-77 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Phac6g01856 LOB 1.8e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01856 - - gmx:100794219 316.235