Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01800 ATGGATTTTGCTATGGGAGGTGCAGGTGGATCTGGTGATGATCACCATAATCACAATCACAATTACAGCCACAATAAGAGCTCAAACAAAGGGAAAAAGGCCTACCATGGTCACAACGCTGATAGAACATCTAAGCTTGAAGAAATGTTTCGCAAGTGTCCACATCCAACTAAAAGCACAAGATGTCAAATAGCAGAAGAACTTGGACTTGATCCTAAACAAGTAAAATTTTGGTTTCAGAACAAGAGAACTCAAATAAAGACTCAAACTGAAAGAACAAATAACAGTATCTTTCGTATTGAGAATGAAAGGATACGTAACGATAACCTCTTATTAAGAGAGGCATTCAAAAATATAATTTGTCCATCTTGTGGAGGTCCATCTAATGTCGATGAAAAACGTCAACGTTCTCTAGAACAACTTCGTCTTGAAAATGCTCGTCTTAAAGAAGAGCATGAGAAGGTGTCTAGTGCTCTAGCAAAGTACATGGATAAACCAATGTTAGACCTAAACATGGACTACACTCTTATGAGGGGATCTTCATCACAAGGTGGCTCAATGAGTGGTTTTCAAGATGAAGATACCATGTCCAACCTTGGGAGAAAAATAACACAAATGGAAAAAACAATGATGTCACAAACTGCAGTGGCTGCTAAGGAAGAATTAATTAAGCTTTTGTGCACCAATGAGCCCATATGGGTCAAACCTTCAAATGATCAAAGATTTGTTCTTCATCTTGAAAGCTACGAAAAATTCTTTCCAAGGATTAATCACTTCAAGAATTCCCAAGCCCGTGTAGAATCCTCAAAAGATTCACGAGTTGTGAGAATTAAGGCAACTGAATTGGTTGACATGTTTTTGAACTCGGAAAGTTGGGCAAATCTTTTCTCAACAATTGTTACAAAAGCACGCACAATCGAAGTACTTGAAAATGGTTCAAATCGAAGTGGAGTTTTGTTGTTGATGAATGAAGAGATGCATGTTCTTTCACCTTTAGTTCCATCTCGAGAATTGTGCTTCCTTCGCTACTGTGAACAAATTGAAGCACATTCATGGGTGATAGTAGATGTTTCGGTTGACTGCACCAACGGGAACAACAATCCTAAGTATTGGAGGTTTCCCTCTGGATGCATGATTCATGAAATTTCAAATGAGTTATGCTGGATTTCTTGGGTTGAACATGTGGAAGTGGATGAGAAGATTAAAACGCATCAACTATACAAAGATATCGTTAACAATAATATTGCATATGGAGCAGAAAGATGGCTTTTGGAACTTCAAAGAATGTGTGCAAGATTTACAAGTGTTGGAGTTGAATGCATACCTAATTACGACTTCTATGGAGTGATCGCTACTCTTGGAGGAAGGAAAAATATGATGAAGTTTTCTGATCAAATGGTGAAAAACTTCTATGGAATTTTAAACATGTCAACTAAGAGAGACTTTCCAGAACATTTAGCTGAGGAGAATATAAATATTAGGATCACTACTCGCAAATACACAAACTCGAGTCAATCAAATCCCATGATTATATTCATTGCTACCACTTCTTTTCGGCTTCCACTCCCCTCAGAAAATGTTTTTGACTTCTTCAGAGATCCAGTAAAACGTGCTAAGTGGGATGTTATGTGTTATGAGAGTCCAGTAAATGAAGTTGCACGTATATCCATTGGAACTCAACCTAGCAACTATATATCAATTATTCAGCCCGTCAACCGAAAGGCAAATAACATGGCTATTATTCAAGAAAGTTGTATTGATCCTTTGGGATCATATGTTGTATATTCCCCTGTGAATATATCTGACATAAAGATGGCAATAAATGGTGAAGAATCAACAACATTGGCAATTTTTCCATCAGGCATTGTCATCTCAAAGGATGGGCAATCTATTACAAATGCTTCTGCATGGAGTAGTGGAAGTGATGATACAAGAACACACAGTACTCTATTGACTGTGGCTTTCCAAATAATGATGAATGGTCCAACAACTATGATAGCAGAATCAAAGACGGTTGTTAACTCTCTCATGACCTCAACAATACAAAATATAAACCATGCTTTGATAAATGGTTCTAATTTAGAGTTTTAA 2091 0.3716 MDFAMGGAGGSGDDHHNHNHNYSHNKSSNKGKKAYHGHNADRTSKLEEMFRKCPHPTKSTRCQIAEELGLDPKQVKFWFQNKRTQIKTQTERTNNSIFRIENERIRNDNLLLREAFKNIICPSCGGPSNVDEKRQRSLEQLRLENARLKEEHEKVSSALAKYMDKPMLDLNMDYTLMRGSSSQGGSMSGFQDEDTMSNLGRKITQMEKTMMSQTAVAAKEELIKLLCTNEPIWVKPSNDQRFVLHLESYEKFFPRINHFKNSQARVESSKDSRVVRIKATELVDMFLNSESWANLFSTIVTKARTIEVLENGSNRSGVLLLMNEEMHVLSPLVPSRELCFLRYCEQIEAHSWVIVDVSVDCTNGNNNPKYWRFPSGCMIHEISNELCWISWVEHVEVDEKIKTHQLYKDIVNNNIAYGAERWLLELQRMCARFTSVGVECIPNYDFYGVIATLGGRKNMMKFSDQMVKNFYGILNMSTKRDFPEHLAEENINIRITTRKYTNSSQSNPMIIFIATTSFRLPLPSENVFDFFRDPVKRAKWDVMCYESPVNEVARISIGTQPSNYISIIQPVNRKANNMAIIQESCIDPLGSYVVYSPVNISDIKMAINGEESTTLAIFPSGIVISKDGQSITNASAWSSGSDDTRTHSTLLTVAFQIMMNGPTTMIAESKTVVNSLMTSTIQNINHALINGSNLEF* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01800 696 Gene3D - 224 431 IPR023393 -
Phac6g01800 696 Gene3D - 16 101 - -
Phac6g01800 696 Coils Coil 131 165 - -
Phac6g01800 696 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 30 688 IPR042160 -
Phac6g01800 696 ProSiteProfiles START domain profile. 204 435 IPR002913 GO:0008289
Phac6g01800 696 SUPERFAMILY Bet v1-like 456 685 - -
Phac6g01800 696 MobiDBLite consensus disorder prediction 1 41 - -
Phac6g01800 696 SUPERFAMILY Bet v1-like 205 433 - -
Phac6g01800 696 SMART HOX_1 30 93 IPR001356 GO:0003677
Phac6g01800 696 CDD homeodomain 32 89 IPR001356 GO:0003677
Phac6g01800 696 SMART START_1 213 432 IPR002913 GO:0008289
Phac6g01800 696 ProSitePatterns 'Homeobox' domain signature. 64 87 IPR017970 GO:0000981|GO:0006355
Phac6g01800 696 SUPERFAMILY Homeodomain-like 24 93 IPR009057 -
Phac6g01800 696 Pfam Homeodomain 38 87 IPR001356 GO:0003677
Phac6g01800 696 ProSiteProfiles 'Homeobox' domain profile. 29 89 IPR001356 GO:0003677
Phac6g01800 696 Pfam START domain 215 432 IPR002913 GO:0008289
Phac6g01800 696 CDD START_ArGLABRA2_like 208 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01800 Phac-Chr6 18982371 18987212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01800 28 688 Homeobox Transcription Factor Family AT1G73360 39.828 4.76e-171 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phac6g01800 START 4.6e-34 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01800 K09338 - gmx:100794552 943.725