Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01748 ATGGGTGCACCAAATGCTTTCAGATGTGGAAGAAGAGGAAGAACAATGGCTGGTAAAAGTTCAATTACTCAGCCAGCAACCAGACATGGCACCAACAAACTGACCAAAAATGACTTAGCTGATCTAGAATGGACCAATAGGATTCCAGAGTGTCCAACTTACTACCCATCAGAGCATGAGTTTGACCATCCTTTAGTTTATCTGCAGAAAATAGCTCCTGAGGCTTCTAAATATGGTATATGCAAAATTGTTTCTCCAATTGCAGCCTCAAATCCACCTGCTTTTGTCTTAATGAAAGAGAAAAGGGATTTCAAGTTTGAAACAAACTTACAGCCTCTCCGTCTTTCTAAATGGAATGAGAAGGATACAATAACCTTTTCTATGAGTGGCAGAAAATATACATATGAGGAATTTGAGGCTCTTGCAAACAAGACTTTTTTCAGTAGATTTAATTGTTCTGGAGGTCTTCCTTCTTCATGTGTGGAAAAGGAGTTCTGGCACGAGATGATGCATGGAAAGAAAGGAAAAGTTGAGTATGGAATCAATGTTGAAGGTAGTGCCTTTTCATGTGATCCTGATGACAGGCTTGGGACAAGTAAATGGAATTTGAAGAATTTCTCACGGCTACTGCAATCGCCGTTACGTTTAGTTGACATGGAAATTCCAGGAATAACTGATCCTATGCTTTACATTGGAATGCTGTTCAGTATGTTTGCATGGCATGTAGAAGATCATTATTTGTACAGCATAAATTATAATCACTCAGGTGCAAGTAAAACTTGGTACGGCGTGCCTGGCTATGCAGCCTCTCAATTTGAAAAGATTGTCTTACAACATGTGTATTGCAATAAGATCTTAACAAAACATGGAGAGGATGGAGCTTTCAGATTTCTTGCACAAAAAACAACCATGTTCCCACCAAATGTCATGTTACAACATGATGTGGAAGTTTACAAGGCTGTACAGAATCCAGGAGAGTTTATCATCACCTTTCCTAGAGCATATCATGCTGGATTTAGTCATGGTTTTAACTGTGGAGAAGCGGTAAACTTTGCTAATGATGAGTGGTTTCCTCTTGGAGCTGCAGCTAGCAGGCGTTATGCACTTCTCAGAATGATGCCTTTAATTCCATATGAGGAACTTCTTTGTAAAGAAGCAATGTTTGTTTACAAGTCCTCAAGGGTCAGAAGTTCCAAGAACAAGCCTGAAGACAAAGCATCTTATAATGCTATAGTGCAGCCTTTCTTGCATCTTATGCAATTTTATATGACATCCCTTTTGCAACAGAAGAGTTCAAGAAACTTGCAAAGGTCTTCCAATACATCAGGTTTGGTGATATGTCGCATATGCCACAGGGATTGTTATGTAGCTTACCTGCTGTGCAAATACTGCTTTTCTCATCCGATTTGTCTTTTCCATGATGTAGACTTCATGATGCTTTGA 1443 0.3936 MGAPNAFRCGRRGRTMAGKSSITQPATRHGTNKLTKNDLADLEWTNRIPECPTYYPSEHEFDHPLVYLQKIAPEASKYGICKIVSPIAASNPPAFVLMKEKRDFKFETNLQPLRLSKWNEKDTITFSMSGRKYTYEEFEALANKTFFSRFNCSGGLPSSCVEKEFWHEMMHGKKGKVEYGINVEGSAFSCDPDDRLGTSKWNLKNFSRLLQSPLRLVDMEIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYNHSGASKTWYGVPGYAASQFEKIVLQHVYCNKILTKHGEDGAFRFLAQKTTMFPPNVMLQHDVEVYKAVQNPGEFIITFPRAYHAGFSHGFNCGEAVNFANDEWFPLGAAASRRYALLRMMPLIPYEELLCKEAMFVYKSSRVRSSKNKPEDKASYNAIVQPFLHLMQFYMTSLLQQKSSRNLQRSSNTSGLVICRICHRDCYVAYLLCKYCFSHPICLFHDVDFMML* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01748 480 Gene3D Cupin 51 414 - -
Phac6g01748 480 Pfam jmjN domain 52 84 IPR003349 -
Phac6g01748 480 ProSiteProfiles JmjN domain profile. 51 92 IPR003349 -
Phac6g01748 480 MobiDBLite consensus disorder prediction 1 32 - -
Phac6g01748 480 MobiDBLite consensus disorder prediction 17 32 - -
Phac6g01748 480 PANTHER LYSINE-SPECIFIC DEMETHYLASE 43 473 - -
Phac6g01748 480 Pfam JmjC domain, hydroxylase 228 351 IPR003347 -
Phac6g01748 480 ProSiteProfiles JmjC domain profile. 195 368 IPR003347 -
Phac6g01748 480 SMART JmjN_1 50 91 IPR003349 -
Phac6g01748 480 FunFam Lysine-specific demethylase isoform A 46 395 - -
Phac6g01748 480 SMART cupin_9 195 368 IPR003347 -
Phac6g01748 480 SUPERFAMILY Clavaminate synthase-like 201 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01748 Phac-Chr6 18605354 18609344 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01748 4 475 JUMONJI Transcription Factor Family AT2G34880 29.314 3.84e-59 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Phac6g01748 JmjC 9.9e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01748 - - vum:124843430 870.537