Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01746 ATGGCAACAGCGGAGGCAGCTCCTGCAGGGCTTGGCCCCAGATATGCACCGGATGACCCTACTCTTCCACAACCGTGGAAGGGATTGATTGACGGCAGTACTGGTCTTTTATACTATTGGAATCCTGAAACCAATGTCACGCAATATGAAAAACCTGCCCCCTTAACGCCACCCTTGCCTGCGCCTGTGGTTTCTGCACCAAGCTTGGCACCTATACCTGTGGCTCACACAATGCAGGCTGGTGGAATGGGGCCGCAACATGGACAACAGTTAATGCAAGGGCAACCCTCACAACAGCAGGTGGGTCACCTTGCCCAACAGCATGGGCAATCGATGCCGCAACAGCAGCAGCAGCAGAGTCCCCATATGGTGCAGGCCACTCAGCAGAAACCCTCTCAGGGTGCCCAGTCTTCACAGCAGCAGAACTCACTGATGACACAGTCAGGGCCGCAACCGGGGTTACATCAAGCCAGACAGCAAATGATGCAGCCCCATGGGCAGCAAATGATGCAGCAGCCTCAAGGACAGCAAATTCAACATCAGATGCCGCCACAGGCAATCCATTCCCAGCATTTTGGGCAAGGAATGCCTCAGGATCATGGTTCACATATTGTACCTCCACAACAAGTACATCAGTTCCCTAACCAAAACATGCATTATATGTCATATCAGCAAAACATTATTACACCCAGGCAATCAAACTCTCAGCACATTCAGCCAAACACGGTCTCACCTGGGCAACCTAACCCACAGCAGGTTCAGCATAGCATGCATGGTCAGCCCTTCGAAAATCAACAAACAGCATTTCCAAAGGTAGAGGAAGCGGAGTTTAAAAATGGAAGCAAGGTTGGACTTTCACCTTCCCAGTATCCACAAAGGAGTACCTTGCCTGTTCAGAATAATCAGAACCTTCCTGCTGACACAGCTTCTGGTCAAATGCCTAATGTAGGTGTCAATGCTGGCCAGCCCCAGCAATTCAGGACTGCCTTATCAGGCAGTGTGCATCAGTCTCCCTCTGCAATGCCATTGCAGCAGGGTGGATCTGATTTATATTACCAACATGGTCCTAACTTTCATAAGCAGATGAGCCCAGGAATGATGCATGGTCATCCATCCAATGTCCATCCTGCTGGCCAAAAAATGAGTCATGAGGATAATTTGCGTAGTAGAGCAGGAAACGAATATTACTATAATTCTAACAAAGATATGTCAACAATGGGTCGTCGGCAACCAGATATGACTCAAATACCCGTTCCAAGAAATCAGCAGGATATGAGGGTTGGCAATGCTCCTTTTCAAAATGTAATGCCAAGTGGAAATGGAAGTGGTATTGCTGGGAATGCTATACCTAGCATGTTTGGTCCTCCAATGGGAGGACCTTCACCCCTTTCCTCTAACACTTTAATGAGGCCTTCTTATATGGGATCTTCTGAGGCTAGTGATCTTTCACCTGCTGAAATTTACTGTCAGCAACATGAAGTTACAGCAACGGGTGGTGACATTCCCCCTCCTTTCATGACATTTGATGCTACTGGGTTCCCTCCAGAGATATTGAGAGAGATATATTCTGCTGGCTTCTCAAATCCAACACCAATACAGGCTCAAACATGGCCTGTTGCACTACAAGGTAGAGACATAGTAGCAATTGCCAAAACCGGCTCGGGGAAAACATTGGGTTACCTAATCCCTGCCTTCATTCTTCTTAGACAGCGACACAATAATTCTCTGAATGGCCCCACTGTATTGGTTTTGGCTCCAACTCGTGAACTTGCGACACAGATCCATAATGAGGTTATCAAGTTTGGTCGATCATCACGAGTCTCTTGCACGTGCTTGTATGGTGGAGCACCTAAAGCCCTTCAACTAAAGGAATTAGATCGAGGAGCAGACATTGTTGTTGCCACACCTGGTCGGCTCAATGATATACTTGAAATGAAGAAAATTGACTTTGGGCAAGTTTCACTACTTGTGCTTGATGAGGCTGACAGAATGCTTGACATGGGTTTTGAGCCTCAAATCCGTAAGATTGTGGATGAGATTCCTGCACGCAGACAAACTCTCATGTACACAGCAACCTGGCCAAAAGAAGTAAGAAAAATTGCTGGTGAACTTCTTGTTAACCCTGTCCAGGTTAACATTGGAAGTGCAGATGAGCTTGCTGCAAATAAAGCTATCACACAGTATGTTGAATTTGTCCCACAAATGGAGAAGCAGAGGCGTTTGGAGCAGATTCTCAGATCCCAAGAACGTGGTTCTAAGGTCATAATATTTTGCTCCACAAAGAGGTTATGTGATCAGCTAGCTCGTAATATTGGCCGCACTTTTGGGGCTGCTGCAATTCATGGAGACAAGTCTCAAGGTGAGAGAGACTGGGTTTTAAGTCAATTCCGGACTGGCAAGTCACCAATTCTGGTTGCCACTGATGTTGCAGCTCGTGGGCTTGATATTAAGGATATAAGGGTGGTTATCAATTATGATTTCCCCACTGGAATTGAGGACTATGTACACCGAATTGGAAGAACTGGAAGAGCAGGTGCTACTGGAGTGTCATATACCTTTTTCTCTGAGCAGGACTGGAAACATGCAGGTGACTTAATCAAAGTTTTGGAGGGTGCTAATCAGCATGTGCTTCCAGAGTTAAGACAGATGGCTTTGCGTGGGCCATCAAACTTTGGAAAGGAACGGGGTGGGATGAGTCGGTTTGATTCTGGTGGTGGGCGTTGGGAGACTGGTGGTCGTGGTAGCATGAGAGATGGTGGCTTTGGTGGCCGTGGTGGCATTAGGGATGGTGGCTTTGGAGGTCGTGGGGGTGGCATGAGGGATGGTGGTTTTGGGGGCCGTGGGGGTGGCATGAGAGATGGTGGCTTTGGTGGTCGAGGTGGTGGCATGAGGGATGGGGGATTTGGTGGACGTGGTGGTGGCGGCTTTGGTGGACGTGGTGGCATGAGGGATGGAGCTGGTGGAAGAGGTGATTACTTTCCTGGTAGGGGCAACAGGGGTAGGGGATCTGGTGGTCCTCGTGGTGGTCATGTTGGTTGGGGTAGGGGTGAACGTGGTATGGATGACCGTGGACTGGGACGTGGCCGATTTGACAACAGAAGGGATGTTTCTTACAAAAATAGAGGCAGAAGTTATAGTCGTAGCCCAGAAAGAGTCCGAACATGGGATTATAGTAGAAGTAGCAGCAGAAGCCGTAGTAGAAGCAGGAGCAGGAGTTGGAGCAGGGGCCGTAGTCGCAGTCGCAGCTGGTCCCGTGGGCGAAGTTACAGTCGCAGCCGGAGCAGGAGCCGCAGCCGCAGCCCCAGTTATGATAGGCGGGATAGGTCAGTTCAACCACTTCCTGATCAAAAGGATCTTAGGGCACACGAAGTAGGAACTTCTGATCCAAGAATGCTTCCCTTGTCTCCTGGTCCTGGCACACAAGCGAATTCCTCTTTGGGAAATGAACAAGTGGAGCAGCAACCTGTTGTTGGTAGCTCTGATCCAGGTAATCCAGAAGCTGTAGCAGACCTTAGTCATCAATCAAGTTCTGGTGTTTAG 3540 0.4884 MATAEAAPAGLGPRYAPDDPTLPQPWKGLIDGSTGLLYYWNPETNVTQYEKPAPLTPPLPAPVVSAPSLAPIPVAHTMQAGGMGPQHGQQLMQGQPSQQQVGHLAQQHGQSMPQQQQQQSPHMVQATQQKPSQGAQSSQQQNSLMTQSGPQPGLHQARQQMMQPHGQQMMQQPQGQQIQHQMPPQAIHSQHFGQGMPQDHGSHIVPPQQVHQFPNQNMHYMSYQQNIITPRQSNSQHIQPNTVSPGQPNPQQVQHSMHGQPFENQQTAFPKVEEAEFKNGSKVGLSPSQYPQRSTLPVQNNQNLPADTASGQMPNVGVNAGQPQQFRTALSGSVHQSPSAMPLQQGGSDLYYQHGPNFHKQMSPGMMHGHPSNVHPAGQKMSHEDNLRSRAGNEYYYNSNKDMSTMGRRQPDMTQIPVPRNQQDMRVGNAPFQNVMPSGNGSGIAGNAIPSMFGPPMGGPSPLSSNTLMRPSYMGSSEASDLSPAEIYCQQHEVTATGGDIPPPFMTFDATGFPPEILREIYSAGFSNPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLIPAFILLRQRHNNSLNGPTVLVLAPTRELATQIHNEVIKFGRSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVDEIPARRQTLMYTATWPKEVRKIAGELLVNPVQVNIGSADELAANKAITQYVEFVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARNIGRTFGAAAIHGDKSQGERDWVLSQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQMALRGPSNFGKERGGMSRFDSGGGRWETGGRGSMRDGGFGGRGGIRDGGFGGRGGGMRDGGFGGRGGGMRDGGFGGRGGGMRDGGFGGRGGGGFGGRGGMRDGAGGRGDYFPGRGNRGRGSGGPRGGHVGWGRGERGMDDRGLGRGRFDNRRDVSYKNRGRSYSRSPERVRTWDYSRSSSRSRSRSRSRSWSRGRSRSRSWSRGRSYSRSRSRSRSRSPSYDRRDRSVQPLPDQKDLRAHEVGTSDPRMLPLSPGPGTQANSSLGNEQVEQQPVVGSSDPGNPEAVADLSHQSSSGV* 1180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01746 1179 Gene3D - 716 886 IPR027417 -
Phac6g01746 1179 MobiDBLite consensus disorder prediction 282 313 - -
Phac6g01746 1179 CDD SF2_C_DEAD 725 854 - -
Phac6g01746 1179 CDD DEADc 517 711 - -
Phac6g01746 1179 Pfam Helicase conserved C-terminal domain 737 845 IPR001650 -
Phac6g01746 1179 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 478 884 - -
Phac6g01746 1179 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 577 860 IPR027417 -
Phac6g01746 1179 MobiDBLite consensus disorder prediction 1 24 - -
Phac6g01746 1179 SUPERFAMILY WW domain 15 53 IPR036020 GO:0005515
Phac6g01746 1179 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Phac6g01746 1179 Gene3D - 482 715 IPR027417 -
Phac6g01746 1179 MobiDBLite consensus disorder prediction 281 313 - -
Phac6g01746 1179 SMART ultradead3 525 728 IPR014001 -
Phac6g01746 1179 FunFam ATP-dependent RNA helicase RhlB 715 887 - -
Phac6g01746 1179 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 537 711 IPR014001 -
Phac6g01746 1179 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Phac6g01746 1179 Pfam DEAD/DEAH box helicase 530 700 IPR011545 GO:0003676|GO:0005524
Phac6g01746 1179 FunFam probable ATP-dependent RNA helicase DDX17 471 714 - -
Phac6g01746 1179 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 740 884 IPR001650 -
Phac6g01746 1179 MobiDBLite consensus disorder prediction 1014 1063 - -
Phac6g01746 1179 MobiDBLite consensus disorder prediction 83 174 - -
Phac6g01746 1179 MobiDBLite consensus disorder prediction 232 258 - -
Phac6g01746 1179 SMART ww_5 21 54 IPR001202 GO:0005515
Phac6g01746 1179 SMART helicmild6 761 845 IPR001650 -
Phac6g01746 1179 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 506 534 IPR014014 GO:0003724
Phac6g01746 1179 MobiDBLite consensus disorder prediction 76 174 - -
Phac6g01746 1179 Pfam WW domain 22 52 IPR001202 GO:0005515
Phac6g01746 1179 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 657 665 IPR000629 -
Phac6g01746 1179 MobiDBLite consensus disorder prediction 1137 1160 - -
Phac6g01746 1179 MobiDBLite consensus disorder prediction 1064 1094 - -
Phac6g01746 1179 MobiDBLite consensus disorder prediction 1097 1125 - -
Phac6g01746 1179 MobiDBLite consensus disorder prediction 887 1179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01746 Phac-Chr6 18583993 18592220 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01746 504 883 Eukaryotic Initiation Factors Gene Family AT3G19760 32.898 7.32e-63 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01746 K12823 - gmx:100807830 1440.63