Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01654 ATGTCAGATCTTATGGAATATTCTCATTCATCGAATGCAGGCACGAGGAAGAAGAGGAGCAAGAACAAAAAAAGGTTCAGCGATGGACAAGTGAAATCATTGGAATCCATGTTTGAGACAGACTCGAGACTGGAACCAGCAAAGAAATTGGAGGTGGCAAGAGAGCTTGGCTTGCAACCAAGACAAGTTGCCATATGGTTTCAGAACAAGAGAGCTCGATGGAAGTTAAAGCAGATTCAGCGAGACTACACCATACTTCGAGCCAATTATAAGACTTTGGATTCACAGTTTCATGCTCTCAACAAAGACTATCAATCAATGTTAATACAGTTGCAGAATATGAAAAATCGATTACAAAAGCCCCTAGAACAAACTGAGAGTTGTAACACAGGATACAAAGCAGCAAACAGCATGGAGAGTGAAGCGGGAAATGGAGAGGCCATCAAAAGAGAACAGGAGATAAAGCAGCCAAGCTCGACAACAGGAAGATCAGAAGACATTTTTTGTGGTGGTATCTCGGAATGTGACAGCAGCATAAAGGCAAAACAAAACTTTGGTGTGGAAGATGAACCTTCCCTTCTGAACTTTGTTGAGAACACTGATGGTTCTTTGACAACATCAGAACATTGGGGTTTGTTAGAATCAGAGGATATATTAGGCCAATTAAGCAGCTGTGATTATCAATGGTGGGACTTCTGGTCCTGA 705 0.417 MSDLMEYSHSSNAGTRKKRSKNKKRFSDGQVKSLESMFETDSRLEPAKKLEVARELGLQPRQVAIWFQNKRARWKLKQIQRDYTILRANYKTLDSQFHALNKDYQSMLIQLQNMKNRLQKPLEQTESCNTGYKAANSMESEAGNGEAIKREQEIKQPSSTTGRSEDIFCGGISECDSSIKAKQNFGVEDEPSLLNFVENTDGSLTTSEHWGLLESEDILGQLSSCDYQWWDFWS* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01654 234 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 17 161 IPR045224 GO:0003700
Phac6g01654 234 CDD homeodomain 26 78 IPR001356 GO:0003677
Phac6g01654 234 ProSitePatterns 'Homeobox' domain signature. 52 75 IPR017970 GO:0000981|GO:0006355
Phac6g01654 234 Pfam Homeobox associated leucine zipper 77 119 IPR003106 GO:0006355|GO:0043565
Phac6g01654 234 Coils Coil 76 96 - -
Phac6g01654 234 PRINTS Lambda-repressor HTH signature 57 73 IPR000047 GO:0003677
Phac6g01654 234 PRINTS Lambda-repressor HTH signature 48 57 IPR000047 GO:0003677
Phac6g01654 234 MobiDBLite consensus disorder prediction 1 38 - -
Phac6g01654 234 ProSiteProfiles 'Homeobox' domain profile. 17 77 IPR001356 GO:0003677
Phac6g01654 234 Pfam Homeodomain 21 75 IPR001356 GO:0003677
Phac6g01654 234 SMART HOX_1 19 81 IPR001356 GO:0003677
Phac6g01654 234 Gene3D - 12 84 - -
Phac6g01654 234 MobiDBLite consensus disorder prediction 139 165 - -
Phac6g01654 234 SUPERFAMILY Homeodomain-like 6 78 IPR009057 -
Phac6g01654 234 FunFam Homeobox-leucine zipper protein ATHB-7 5 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01654 Phac-Chr6 18009493 18011196 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01654 25 234 Homeobox Transcription Factor Family AT3G61890 46.296 5.02e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phac6g01654 Homeodomain 7.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01654 K09338 - gmx:100806279 285.804