Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01653 ATGTTTGAGACAGACTCGAGACTGGAACCAGCAAAGAAATTGGAGGTGGCAAGAGAGCTTGGCTTGCAACCAAGACAAGTTGCCATATGGTTTCAGAACAAGAGAGCTCGATGGAAGTTAAAGCAGATTCAGCGAGACTACACCATACTTCGAGCCAATTATAAGACTTTGGATTCACAGTTTCATGCTCTCAACAAAGACTATCAATCAATGTTAATACAGTTGCAGAATATGAAAAATCGATTACAAAAGCCCCTAGAACAAACTGAGAGTTGTAACACAGGATACAAAGCAGCAAACAGCATGGAGAGTGAAGCGGGAAATGGAGAGGCCATCAAAAGAGAACAGGAGATAAAGCAGCCAAGCTCGACAACAGGAAGATCAGAAGACATTTTTTGTGGTGGTATCTCGGAATGTGACAGCAGCATAAAGGCAAAACAAAACTTTGGTGTGGAAGATGAACCTTCCCTTCTGAACTTTGTTGAGAACACTGATGGTTCTTTGACAACATCAGAACATTGGGGTTTGTTAGAATCAGAGGATATATTAGGCCAATTAAGCAGCTGTGATTATCAATGGTGGGACTTCTGGTCCTGA 597 0.4188 MFETDSRLEPAKKLEVARELGLQPRQVAIWFQNKRARWKLKQIQRDYTILRANYKTLDSQFHALNKDYQSMLIQLQNMKNRLQKPLEQTESCNTGYKAANSMESEAGNGEAIKREQEIKQPSSTTGRSEDIFCGGISECDSSIKAKQNFGVEDEPSLLNFVENTDGSLTTSEHWGLLESEDILGQLSSCDYQWWDFWS* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01653 198 ProSitePatterns 'Homeobox' domain signature. 16 39 IPR017970 GO:0000981|GO:0006355
Phac6g01653 198 MobiDBLite consensus disorder prediction 103 129 - -
Phac6g01653 198 Pfam Homeobox associated leucine zipper 41 83 IPR003106 GO:0006355|GO:0043565
Phac6g01653 198 SMART HOX_1 1 45 IPR001356 GO:0003677
Phac6g01653 198 SUPERFAMILY Homeodomain-like 1 53 IPR009057 -
Phac6g01653 198 Pfam Homeodomain 1 39 IPR001356 GO:0003677
Phac6g01653 198 ProSiteProfiles 'Homeobox' domain profile. 1 41 IPR001356 GO:0003677
Phac6g01653 198 Gene3D - 1 46 - -
Phac6g01653 198 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 125 IPR045224 GO:0003700
Phac6g01653 198 Coils Coil 40 60 - -
Phac6g01653 198 PRINTS Lambda-repressor HTH signature 12 21 IPR000047 GO:0003677
Phac6g01653 198 PRINTS Lambda-repressor HTH signature 21 37 IPR000047 GO:0003677
Phac6g01653 198 CDD homeodomain 2 42 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01653 Phac-Chr6 18009493 18011196 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01653 1 198 Homeobox Transcription Factor Family AT3G61890 45.098 1.00e-42 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phac6g01653 HALZ 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01653 K09338 - gmx:100806279 261.922