Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01638 ATGGGTTTCCGTGCTGATGAGGCAAAGCCGAGTATGCAACATCAACCTTGCGCAGCTTGCAGGATGTTACGCCGCAGATGTGACAGTAAGTGCGTACTTGCTCCATATTTCCCAACCAATGAGGTTGAGAATTTTGCTGTAGTGCATAGAGTGTTCGGTGCTAGCAACGTTGTCAGAATGATTCAGATGGTTGAGGAAACAAAGAGAGAGGATGCAGTTAAATCCATGGTGTATGAGGCCACAGCAAGGCTTAGAGATCCAGTTTATGGGAGTGCTGGAGCTATTTACGAGTTACAAAAGATGATTGAGGAAGTGAAGGCACAGCTGGATTCGATAAAAACGCGGGTGTCAGAGATGCAAGAACAAAAGGAGCAGTTGTTGAGTATTAGTGGCAATTACAATCCTTTATTTGGCGTCAATGACCCTATGTTTGATTCTCCTATGGCCTCAGATCCATTTGAATTTCCTTTGGAAGGTGGTTGGGGATACACCAATATCTCAGCACCCTCCTGCTAG 516 0.4535 MGFRADEAKPSMQHQPCAACRMLRRRCDSKCVLAPYFPTNEVENFAVVHRVFGASNVVRMIQMVEETKREDAVKSMVYEATARLRDPVYGSAGAIYELQKMIEEVKAQLDSIKTRVSEMQEQKEQLLSISGNYNPLFGVNDPMFDSPMASDPFEFPLEGGWGYTNISAPSC* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01638 171 Pfam Lateral organ boundaries (LOB) domain 16 113 IPR004883 -
Phac6g01638 171 Coils Coil 95 129 - -
Phac6g01638 171 ProSiteProfiles LOB domain profile. 15 116 IPR004883 -
Phac6g01638 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 14 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01638 Phac-Chr6 17895606 17896498 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01638 16 132 AS2 family AT2G28500 55.556 7.52e-45 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Phac6g01638 LOB 1.6e-38 No_clan