Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01607 ATGATGTTCTTGAATCTCCTGTTCCACTTCTTCATACTTTTTGCTGTCGCATATGCCTCATCTGATTGCCAAGATTATTCTTGGTGCAGCGACAACAACATCCTTATTCGTTTTCCCTTCCAAATACAAGGTCAGCAACATCCATATTGCGGCTATCCTGGTTTCAAACTAACTTGTTCCAATGATAGCAAAACAGTCATAACACTTCCTTACACGGGAAAGTTCTTTGTCCGCAACATTAACTACCTCAGACAACAGATGCAAGTGTATGACCCAGATGATTGCCTTCCAAAACGTCTTCTAAGCCTCAACCTTTCAGGTTCTCCCTTCATTGTTGCCTCTTCACTCCGCAACTACACCCTCTTAAGCTGCCCAACTCGGCGCACGGGGTCTCAATTCATTCCCATTGACTGTCTCAGCAATTCAACATCTTTTGTGTCAGCTATTCCTTCTGTCAACTTCACCAATTCATTGCTCCAGTCTTGCCATGTTCTAAAGAAACTCTCATTTCCAGTCGCAGGGCTGGGACCAAATCAGGAAACTTTCAGAGATGACCTCCTTACTGGAGATCTTCTATTAGCATGGTATGCACCTGACTGTAGATACTGCGAATTACAAGAAGCCATGTGCGGATTTGAGAGCATAAACAGTGATCAAGTTCGTTGTTTCTCTGATTACCAAACTGGGCGTCCACAACATGGTCTTCGAGTTTTTGGAATCATCACATTATCCACTGTTGGACCAGCTATCATATGCGCCATTGGAATGGCATGCTACGCCTCCTTCATGTACAGAAGAAGCAGCACAGCCAGAATTGGTGCAGCACAGAGTTCTACACCAACTGGCATGTCACCTCAACCTGCCATTGTTAGGATGGGCTTGGATGAGTCTACAATCGAGTCGTATCAGAAACTGGAACTGGGGGAGAGCAGAAGAGTGCCAGGACCTAATGAGGGATGTTGCACCATATGCCTCTCAGAGTATAAAGCCAAAGACACGATAAGATGCATTCCTGAATGTTCACATTGCTTCCATGCCGACTGCATCGATGAATGGCTTCGCATGAACAGTACATGCCCTCTTTGTCGCAACTCTCCTTCCCATCCCTCTACTGTTCTACCTATGTCCACTCACCATTGA 1140 0.4535 MMFLNLLFHFFILFAVAYASSDCQDYSWCSDNNILIRFPFQIQGQQHPYCGYPGFKLTCSNDSKTVITLPYTGKFFVRNINYLRQQMQVYDPDDCLPKRLLSLNLSGSPFIVASSLRNYTLLSCPTRRTGSQFIPIDCLSNSTSFVSAIPSVNFTNSLLQSCHVLKKLSFPVAGLGPNQETFRDDLLTGDLLLAWYAPDCRYCELQEAMCGFESINSDQVRCFSDYQTGRPQHGLRVFGIITLSTVGPAIICAIGMACYASFMYRRSSTARIGAAQSSTPTGMSPQPAIVRMGLDESTIESYQKLELGESRRVPGPNEGCCTICLSEYKAKDTIRCIPECSHCFHADCIDEWLRMNSTCPLCRNSPSHPSTVLPMSTHH* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01607 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 367 IPR013083 -
Phac6g01607 379 Pfam Wall-associated receptor kinase galacturonan-binding 23 91 IPR025287 GO:0030247
Phac6g01607 379 CDD RING-H2_EL5-like 320 363 - -
Phac6g01607 379 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 367 IPR046948 -
Phac6g01607 379 SMART ring_2 321 362 IPR001841 -
Phac6g01607 379 Pfam Ring finger domain 321 363 IPR001841 -
Phac6g01607 379 SUPERFAMILY RING/U-box 320 369 - -
Phac6g01607 379 ProSiteProfiles Zinc finger RING-type profile. 321 363 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01607 Phac-Chr6 17694148 17696743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01607 29 367 C3H Transcription Factor Family AT2G25410 42.529 1.64e-88 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01607 - - gmx:100799895 621.698