Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01606 ATGGAGCAGAACCGGGGCAGCAAGATGTGCAACCTGTTCGTGAAGCACTTGGACGGGAAAACCCTAACCCTCTTATTCCCCTCTCCGATCGTCTACGCGAGTTCCATCAAGGATCGCCTCTTCGAACTCACCGGAATTCCCGTGCAGCACCAGCGCCTCGTCACCGGCTTTCGCCACCTCAACGACGAAAAATCGGCGATCCAGTGCTCCCCGGAGGATGGCAACATGTTCCCGTCGGTGCGGCTGCTGCTGCGTCTCAAAGGCGGTAAAGGAGGCTTCGGGTCTCTTCTTCGCGGCGCCGCGACGAAGGCAGGGCAGAAGAAGACCAACAATTTCGACGCGTGTCGGGACATGAGTGGCCGGAGGCTGAGGCACGTCAACGCCGAGAAGAGGTTGGAGGAGTGGAAGGCCGGAGAAGACGAGAGAAAACTCGAGAAGGTGGCGGAGGAGTTTCTCAAGAAGCAAATGAAGAAGGGTAAGGGTAAGGGAAAGGCTGACGGTGATGGTGAAGCTCACAAATACGTGGAGAAATATCGGGCGGAATCTGAACGTTGTGTTGCGGATGTTGCCTTGTCCGTTAAGGAGGCTCTTACTGCCAAACGCAAGAGCCCTTCACAACCCCACCGTGATGCCAAGAAGTTGAAGATATGGACGGGGAAGAGGAAATTGAATGAAAGTGATAGCGATTATAGTGACGATTCCGATGTAGAGGGGAAAATGGAGAAATCTGATTTGTTGAATGACCAGAATGAGTCTGAGTCAACTAAGGCTGAGGGAAGTCTGGGTTCAGTGACTGGTGGAGGAGGCGCCTCTGGTTCTGGCTCTTGTGAAAGTGGGTCCGAGGAAGAGAAGGAAACTGTTGTACAAGTAAATGTCGGATCTGTTGGGTTGCTGAGTGATGAAAGTATTCAGGTCATGGACGAACCTGTGATAAGCAATGAGACTACTGCAATGCCAAATGAGTCAGTGGTTGTTGGACTCAATGCGGAAGAAGATGGAAATCAGGATTGCCATGGAGGTGTGTCTGATAAGTTTGATGGTGCTCTGAATCAGGCCTCAAATATTACAGGCTCTGAAACTGTGGCCATTGGCAAATCTAATAATGATATGGAAATTGATGGATCACTTGAGCATAAAGCAGCAGTCAATGAAGAGAGCTCGCCAAGCACTAGTGTACCTGCAATGGATGAGCCCCTTAATTTTGATGCCTTTAACTCCTCTGCCGATCTTGAGGTTATTGGCTTGGAAAGATTGAAGTCTGAACTGCAGTCACGTGGGTTAAAATGTGGAGGTACTTTGCAGGAGCGGGCTGCCAGGCTTTTTCTTTTAAAATCAACTCCTCTGGATAAACTTCCAAAGAAGCTGCTTGCTAAGAAGTAA 1380 0.5007 MEQNRGSKMCNLFVKHLDGKTLTLLFPSPIVYASSIKDRLFELTGIPVQHQRLVTGFRHLNDEKSAIQCSPEDGNMFPSVRLLLRLKGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWKAGEDERKLEKVAEEFLKKQMKKGKGKGKADGDGEAHKYVEKYRAESERCVADVALSVKEALTAKRKSPSQPHRDAKKLKIWTGKRKLNESDSDYSDDSDVEGKMEKSDLLNDQNESESTKAEGSLGSVTGGGGASGSGSCESGSEEEKETVVQVNVGSVGLLSDESIQVMDEPVISNETTAMPNESVVVGLNAEEDGNQDCHGGVSDKFDGALNQASNITGSETVAIGKSNNDMEIDGSLEHKAAVNEESSPSTSVPAMDEPLNFDAFNSSADLEVIGLERLKSELQSRGLKCGGTLQERAARLFLLKSTPLDKLPKKLLAKK* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01606 459 Pfam Replication stress response SDE2 C-terminal 384 458 IPR025086 -
Phac6g01606 459 Gene3D - 3 91 - -
Phac6g01606 459 MobiDBLite consensus disorder prediction 252 277 - -
Phac6g01606 459 MobiDBLite consensus disorder prediction 198 288 - -
Phac6g01606 459 MobiDBLite consensus disorder prediction 201 251 - -
Phac6g01606 459 PANTHER SPLICING FACTOR SF3A-RELATED 11 458 - -
Phac6g01606 459 Pfam Silencing defective 2 N-terminal ubiquitin domain 11 157 IPR024974 -
Phac6g01606 459 CDD Ubl_ubiquitin_like 12 77 - -
Phac6g01606 459 ProSiteProfiles Ubiquitin domain profile. 10 75 IPR000626 GO:0005515
Phac6g01606 459 SUPERFAMILY Ubiquitin-like 7 89 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01606 Phac-Chr6 17688832 17692084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01606 392 458 C2H2 Transcription Factor Family AT5G06160 44.776 2.00e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01606 K25059 - gmx:100799364 637.876