Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01602 ATGAATTCAAAAGGACATAAATTTGTGAGGTTTGAAGATTGGAAATCGGAGTCATCTTTTAGCATAGAGAAAAACGATGAAAATCACAAAAGAACACCAAGTGTGATTGCAGTTTTGAAGAGTATAGGAAGAAGGGTTGAGAGTAGGTCTAAGAAGATGAAGAACTTTAACAGAGTTTCAGATGTTCATCCCGTAAGTGATGGACAGAAAAAGTCGCCACCTAGGAAGGTCATTCTTGATCCAAAGGATCCAATGCTTCAGAAATGGAACAAAATCTTTGTAATATCGTGTGTGTTGGCAGTCTCTGTGGACCCGTTCTTCTTTTACATTCCAGTGATTAATAATGAAGAAAAATGCCTTGATATGAGTGGATCATTGCAGATCACTGCCAGTGTTTTTCGCACCTTCTTTGATCTATTCTACGTTCTTCACATAATCTTTCAGTTTAAGACAGGGTTCATTTCCCCTTCTTCTCGTGTTTTTGGATCGGGTGACCTCAATGATGATCCTGTGGCGATAACTAAAAGATACTTAACTTCATACTTCATCATTGACGTTCTATCTATTATTCCACTTCCACAGGTGATTGTTTTAGCCATACATCCAAACATGAAAATGAATCCATTTGTAGCAAAGGATTTGTTGAAGTATTCTGTATTAATCCAGTATGTGCCAAGGCTTTTGCGGATCCATCCACTGTTCAAAGAAGTAACTAGAACTTCTGGCATATTGACTGAGACAGCAGGGGCTGGAGCTGCTTATAATCTTTTTCTTTATATGCTAGCAAGTCATTTAGTTGGAGCTTTCTGGTATTTGCTCTCGGTAGAGTCAGAGGTGCGTTGCTGGCGCACAAAGGTGAAGAGTGGAGACTTGAGTTGTAGAAACCGCACCCCAGACACCATTGCACTTCTCAATCAAACATGTTCTTTGGTTGACCCTGATGATATCAGAGACGGAGAAAACTACAATTTTGGGATCTTTTTTTATGCTTTACATTCAGGTGTGGTAAAATCAACAACAGAATTTCCTGAAAAGTTCTTCTATTGCTTTTGGTGGGGTCTGCGCAGTTTAAGTTCTCTTGGACAAGATCTCAAGACAAGTACTTATGTGCCAGAGATAGCGTTTGCAATCTTCATTGCCATCTTTGGATTGGTTTTATTCTCGTCACTTATTGGAAACATGCAGGAATATTTGCAATCTACAACTGTTAGAGTGGAGGAGATGAGAGTGAAGAGACAGGACGCAGAACAGTGGATGTCCCACCGTATGCTACCTGAGAACTTGAAGAGAAGAATTAGACATTACGAACAGTATCAATGGCAAGAAAATAGGGGTGTTGAGGAGGAGGCATTAATTCGTAACCTTCCTAAAGATCTCAGAAGGGACATAAAGCGTCACCTTTGCCTAGCTTTGGTTAAAAAGGTGCCATTGTTTAAGGAAATGGATGAGCAGTTGTTGGATGCAATATGCACTAGACTGAAGCCAGTCCTTTATACTGAGAAGAGCCACATTTTTCGTGAAGGAGATCCGGTTGATGAGATGCTTTTCATTATGCGTGGACAAGTCTCTACCGTGACCACAAATGGTGGAAGAACTGGTTTCTTCAACTTCTCTTTTCTCGTAGCTGGTGAATTCTGCGGAGAGGAGCTTCTGACATGGGCCTTGGATCCTAACTCCTCCTCGAATCTTCCCATTTCAACTAGGACAGTAGAAACCGTATCAGAAGTTGAAGCCTTTGCTCTCATGGCGGATGACTTGAAGATTGTTGCTTCCCAATTTCGCCGTCTTAGCAGCAAACAGCTCCAACACGCTTTCAGGTTCTATTCCTCACAGTTTAGGACATGGGGTGCCTGTTTCATTCAAGCAGCTTGGCGTCGATACTGGAAAAGGAAGATTGAGAGGTCTTTGCATGTAAAAGAAGACAAGCTACAAGATGCTTTGACAAATGATGATGGCTCTACTCTAAGCCTTGGTGCAACCATATATGCATCAAGGTTTGCTGCCAATGCACTGCGAAACTTGAGAGAAAATAACAGACAGAATAGAATGCAACAGAGACTACTGCCTTTGCTACCTCCAAAGCCAGCCGAGCCAGATTTCACTTCTCTGAAACACTAA 2118 0.4145 MNSKGHKFVRFEDWKSESSFSIEKNDENHKRTPSVIAVLKSIGRRVESRSKKMKNFNRVSDVHPVSDGQKKSPPRKVILDPKDPMLQKWNKIFVISCVLAVSVDPFFFYIPVINNEEKCLDMSGSLQITASVFRTFFDLFYVLHIIFQFKTGFISPSSRVFGSGDLNDDPVAITKRYLTSYFIIDVLSIIPLPQVIVLAIHPNMKMNPFVAKDLLKYSVLIQYVPRLLRIHPLFKEVTRTSGILTETAGAGAAYNLFLYMLASHLVGAFWYLLSVESEVRCWRTKVKSGDLSCRNRTPDTIALLNQTCSLVDPDDIRDGENYNFGIFFYALHSGVVKSTTEFPEKFFYCFWWGLRSLSSLGQDLKTSTYVPEIAFAIFIAIFGLVLFSSLIGNMQEYLQSTTVRVEEMRVKRQDAEQWMSHRMLPENLKRRIRHYEQYQWQENRGVEEEALIRNLPKDLRRDIKRHLCLALVKKVPLFKEMDEQLLDAICTRLKPVLYTEKSHIFREGDPVDEMLFIMRGQVSTVTTNGGRTGFFNFSFLVAGEFCGEELLTWALDPNSSSNLPISTRTVETVSEVEAFALMADDLKIVASQFRRLSSKQLQHAFRFYSSQFRTWGACFIQAAWRRYWKRKIERSLHVKEDKLQDALTNDDGSTLSLGATIYASRFAANALRNLRENNRQNRMQQRLLPLLPPKPAEPDFTSLKH* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01602 705 Pfam Cyclic nucleotide-binding domain 498 587 IPR000595 -
Phac6g01602 705 Gene3D - 91 401 - -
Phac6g01602 705 ProSiteProfiles cAMP/cGMP binding motif profile. 477 561 IPR000595 -
Phac6g01602 705 Gene3D Jelly Rolls 475 595 IPR014710 -
Phac6g01602 705 FunFam Cyclic nucleotide-gated ion channel 1 475 593 - -
Phac6g01602 705 MobiDBLite consensus disorder prediction 682 705 - -
Phac6g01602 705 SUPERFAMILY Voltage-gated potassium channels 81 399 - -
Phac6g01602 705 FunFam Cyclic nucleotide-gated ion channel 1 404 468 - -
Phac6g01602 705 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 66 700 - -
Phac6g01602 705 CDD CAP_ED 477 608 IPR000595 -
Phac6g01602 705 Gene3D Helix hairpin bin 404 468 - -
Phac6g01602 705 SMART cnmp_10 477 608 IPR000595 -
Phac6g01602 705 Pfam Ion transport protein 89 405 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Phac6g01602 705 SUPERFAMILY cAMP-binding domain-like 406 602 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01602 Phac-Chr6 17677890 17682525 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01602 1 702 Ion Channels AT5G53130 61.335 0.0 879
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01602 K05391 - gmx:100797784 1100.12