Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01532 ATGGCGAAGAGGGAGCGAGTGAGAGGAGTGTCGGCGTCGGAATTGAAGGAGAGGTTGAGGGAATTGGTGAAGGCTATAGTGGACTCCGACGACTACACGGTGGAAGCCGCCGACGAAGCCATCGCCACCCTTTCGGCTCTCAAACATTTTAAGTCTCCAAACTCTTTGGACGACTTTCCCCTTCCTCCCGAATTTCGATGCCCCATTTCAACCCAGTTGATGACGGATCCCGTTATCTTATCCACCGGCCAGACTTATGATAGGCCATTCATTCAGAGGTGGTTGAATGAGGGCCACAGAACGTGTCCACAGACCCAGCAGGTCTTGTCTCACTCAATTTTAACACCTAATTACTTGGTCCGAGACATGATTGTGCAGTGGTGCAGGGACCGTGGAATTGAGCTTCCTAAGCCTGTTAATGACATTGATGAAGTGGTAACCAATGCGGATAGGAACCATTTGAATTCGTTGCTTCGCAAGTTGTCATTGTCTGTTTCTGATCAGAAACAAGCTGCTAAGGAGCTGCGCCTTTTGACAAAAAGAATGCCTTCGATTCGAATTCTTGTTGGGGAGTCCAGTGATGTGATTCCCCAACTGCTGAGTCCATTATCATCGCCTGGCACGGCTTCTGCTGATCCTGATCTCCACGAGGACTTGATCACTACGGTTCTCAATCTCTCTATCCATGATGATAACAAGAAGGTCTTTGCAGAGGACCCTGCAGTGATTTCTCTGCTTATTGATGCCTTGAAAAGTGGAACAATTCAAACGAGGAGCAATGCTGCTGCTGCTATTTTCACATTGTCTGCGCTAGATTCCAACAAACACATCATTGGAAAATCCGGGGCTATCAAGCATTTGCTTGAGCTTTTGGATGAGGGACAGCCATTGGCCATGAAAGATGCTGCTTCAGCCATATTTAACCTTTGTCTTGTGCACGAGAATAAAGGGAGGACAGTGCGAGATGGGGCGGTTCGGGTTATTCTGAAGAAGATGATGGACCACATTCTGGTTGATGAGTTGTTGGCTATACTGGCACTCCTATCCAGTCATCCCAGGGCTATTGAAGAAATGGGTGACCTAGGTGCTGTTCCTTTGTTATTGGGGATTATTAGGGAGAGCACATCGGAGAGGAGCAAGGAAAATTGTGTTGCAATTCTGTATACAATCTGTTTTAGTGATAGAACAAAGTTGAAGGAAATTAGAGAAGAAGAAAAAGCAAATGGTACACTGTTAAATCTTGCACAATGTGGAACTTCAAGGGCAAAAAGGAAGGCTAACGGTATTCTTGAAAGGCTTAATAGATCCCCCTCCTTAACACACACTGCTTAG 1332 0.4632 MAKRERVRGVSASELKERLRELVKAIVDSDDYTVEAADEAIATLSALKHFKSPNSLDDFPLPPEFRCPISTQLMTDPVILSTGQTYDRPFIQRWLNEGHRTCPQTQQVLSHSILTPNYLVRDMIVQWCRDRGIELPKPVNDIDEVVTNADRNHLNSLLRKLSLSVSDQKQAAKELRLLTKRMPSIRILVGESSDVIPQLLSPLSSPGTASADPDLHEDLITTVLNLSIHDDNKKVFAEDPAVISLLIDALKSGTIQTRSNAAAAIFTLSALDSNKHIIGKSGAIKHLLELLDEGQPLAMKDAASAIFNLCLVHENKGRTVRDGAVRVILKKMMDHILVDELLAILALLSSHPRAIEEMGDLGAVPLLLGIIRESTSERSKENCVAILYTICFSDRTKLKEIREEEKANGTLLNLAQCGTSRAKRKANGILERLNRSPSLTHTA* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01532 443 Gene3D - 149 334 IPR011989 -
Phac6g01532 443 CDD RING-Ubox_PUB 62 114 IPR045210 -
Phac6g01532 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 134 IPR013083 -
Phac6g01532 443 PANTHER U BOX DOMAIN-CONTAINING 17 433 - -
Phac6g01532 443 FunFam RING-type E3 ubiquitin transferase 60 134 - -
Phac6g01532 443 SMART arm_5 229 270 IPR000225 GO:0005515
Phac6g01532 443 SMART arm_5 351 392 IPR000225 GO:0005515
Phac6g01532 443 SMART arm_5 271 311 IPR000225 GO:0005515
Phac6g01532 443 SUPERFAMILY RING/U-box 50 138 - -
Phac6g01532 443 Gene3D - 335 437 IPR011989 -
Phac6g01532 443 FunFam RING-type E3 ubiquitin transferase 191 335 - -
Phac6g01532 443 ProSiteProfiles U-box domain profile. 60 134 IPR003613 GO:0004842|GO:0016567
Phac6g01532 443 SMART Ubox_2 64 127 IPR003613 GO:0004842|GO:0016567
Phac6g01532 443 FunFam RING-type E3 ubiquitin transferase 338 439 - -
Phac6g01532 443 SUPERFAMILY ARM repeat 150 434 IPR016024 -
Phac6g01532 443 Pfam U-box domain 62 130 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01532 Phac-Chr6 17346612 17348782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01532 123 443 U-box Gene Family AT3G07360 59.517 1.22e-125 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01532 - - gmx:100806619 763.837