Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01520 ATGTTCAAGCTATCTCGCGTGCTTCATCTCACTACCACTTCTAGGCATAGGCTGTTGGAAGTGTTGTCATCTAGGAATGTTGAAGTTGGAGACTCTCTGCGGGATAGGCGTGATTTTACCTACTCAGCTGGCATTTCTACTGCTACAAATAATTATGCTGCCAAAGGATATGCTTCGGATCGTATATTTGCCCCTTATACTGTTTACAAGGGCAAAGCGGCATTCTCGTTGAGTCCTTGTCTTCCAACTTTTACTAAGTTGGATTCCGGGACTGTTGTAGTTGATCGACGTGGTTCAATGATGATAACTTTCATGCATTCTATTGGAGAGCGCAAATATGACTGGGAGAAGAGACAGAGATTTGCTCTCTCCGCCACTGAAGTTGGTTCTTTGATAACGATGGGCGCTCAAGATTCCTCTGAATTCTTTCATGACCCTTCAATGTTATCAAGTAATGCTGGTCAGGTAAGGAAGAGCTTATCAATTAAGCCTAATGCAAACAGCAATGGATACTTTGTGTCATTGACTGTTGTCAACAACCTGTTAAACACCAAAGACTACTTCAGTGTTCCTGTCACAACTGCTGAGTTTGCCGTAATGAAGACAGCTTGCAGTTTTGCATTGCCACACATTATGGGTTGGGACCAGATTACTAATCAGCAATCCAGAGGCACAGTGGGCCTTCAACAGAAGGGTGGCTCTCAAGTTTTAGACTTGGAATGGGAAAAATGA 732 0.4331 MFKLSRVLHLTTTSRHRLLEVLSSRNVEVGDSLRDRRDFTYSAGISTATNNYAAKGYASDRIFAPYTVYKGKAAFSLSPCLPTFTKLDSGTVVVDRRGSMMITFMHSIGERKYDWEKRQRFALSATEVGSLITMGAQDSSEFFHDPSMLSSNAGQVRKSLSIKPNANSNGYFVSLTVVNNLLNTKDYFSVPVTTAEFAVMKTACSFALPHIMGWDQITNQQSRGTVGLQQKGGSQVLDLEWEK* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01520 243 SUPERFAMILY ssDNA-binding transcriptional regulator domain 59 221 IPR009044 GO:0003677|GO:0006355
Phac6g01520 243 Gene3D Transcriptional Coactivator Pc4; Chain A 52 225 IPR009044 GO:0003677|GO:0006355
Phac6g01520 243 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 40 243 IPR013742 GO:0003697|GO:0006355|GO:0006952
Phac6g01520 243 Pfam Whirly transcription factor 68 202 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01520 Phac-Chr6 17218155 17221564 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01520 37 243 Whirly Transcription Factor Family AT1G71260 59.906 1.23e-90 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Phac6g01520 Whirly 1.2e-53 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01520 K26561 - gmx:100527314 407.912