Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01507 ATGACTTCCTCACTCACGTGTCAGACCCAATACTCTCTTCCTTTCAACGAAAATGACTCTCAAGAAATGCCCCTTTACCAAGTTCTGTCTCAGGCTGCTGCAATTTCCTCGGAAACAATAATATCATCGTTATCTTCGGTGTCTCATGCTTCAACTGTTGCCGAAGCAGAGGCTTCTGTTTCGTACAGAGGGGTTCGGAGGAGGCCATGGGGGAAGTACGCGGCAGAGATAAGGGACTCCACGAGGAACGGAGTGAGGGTTTGGTTGGGAACCTTCGACACTGCCGAGGCTGCTGCTCTGGCTTACGACCAGGCTGCTTTCGCCATGCGAGGCTCCAAGGCAGTGCTCAACTTCCCAGCTGAGATTGTTTGGCAATCGCTTCGGAAGATGGAGTATGGTTTTGACCAAGGGTCTTCCCCCGTTCTGGAGTTGAAAAAGAGACACTCCATAAATAGAAAATGGGAGAGGAAGAAGCTGAAGAAGAATGTGCAGGAAGAAGAAGAAGAAGAAGAAGTAGGCGTTTCGCAACATGTGATGGTGTTGGAGGACTTAGGCACAGAGTATTTGGAACATCTTCTTACTCTCTCCCAGGATCTGAATGTTTCTTAG 609 0.4893 MTSSLTCQTQYSLPFNENDSQEMPLYQVLSQAAAISSETIISSLSSVSHASTVAEAEASVSYRGVRRRPWGKYAAEIRDSTRNGVRVWLGTFDTAEAAALAYDQAAFAMRGSKAVLNFPAEIVWQSLRKMEYGFDQGSSPVLELKKRHSINRKWERKKLKKNVQEEEEEEEVGVSQHVMVLEDLGTEYLEHLLTLSQDLNVS* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01507 202 Coils Coil 151 171 - -
Phac6g01507 202 Gene3D AP2/ERF domain 61 121 IPR036955 GO:0003700|GO:0006355
Phac6g01507 202 ProSiteProfiles AP2/ERF domain profile. 61 119 IPR001471 GO:0003700|GO:0006355
Phac6g01507 202 FunFam Ethylene-responsive transcription factor 2 60 121 - -
Phac6g01507 202 SUPERFAMILY DNA-binding domain 62 121 IPR016177 GO:0003677
Phac6g01507 202 CDD AP2 62 120 IPR001471 GO:0003700|GO:0006355
Phac6g01507 202 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Phac6g01507 202 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Phac6g01507 202 PANTHER DNA-BINDING DOMAIN 48 194 IPR044808 GO:0003700|GO:0009873
Phac6g01507 202 SMART rav1_2 61 125 IPR001471 GO:0003700|GO:0006355
Phac6g01507 202 Pfam AP2 domain 62 111 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01507 Phac-Chr6 17165184 17166389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01507 13 198 AP2-EREBP Transcription Factor Family AT3G23240 53.226 2.71e-62 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Phac6g01507 AP2 2.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01507 K14516 - gmx:100787732 219.164