LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac6g01478	ATGGCCCCTACTGGAAGAGCTGAGAAGGCCTTTAGCTTTATGATGACCTTAGGAATTTCTATGGAGGAGGTGAAGCCAGTGTTGATAAAGCTATTAAGAGTTTATGAAGGAAATTGGGAACTTATTGAAGATGACACTTATCGAACACTGGTAGATGCGTACTTTGATTTTGATAAAGACAAGGTAGTTGAAGGTGAGAGAAAACCTAATGGCAGTGGTTATGGTGGACAAAACTCAACAGGGGAACCGTCCTTGGTAGATAGTGACGACTGTCATTTATTAACCATAGACAGCTCAAGCAAAATGTTAAGTCTAGAAGACAGAAAAATATCATCAAAGAACTTTGAGCGGAAAAATATTAAGCCATCTCAAACAATCACGGAAGATGTTAAGCCCAAAATCAGTTCACAAGCATCACATTCAACGTTCAGTGAGGTAGAAAAGATCTCTAATTTACCTCGTGGGGCAGCTAAAGATGGAGAATCTTACCCTGAGAAAGCTTCATCTGCAGGGCCCCGTGGCCAGTTCGAGAATAACACTGTGAAGCCAAGAGCTAAGAAACCCAAGTTACTCACTTCGACGAATCATAATGGAGATATTTGTGTTAAACCTCTGTCAACTCAGGATCAGGATTTGCACAGTAAAAATGTTGTACCCGCCTGCATCAGTAATATTACGATCGCTAGTTCTTCACGTCTTGAAGAAGTTAAAATGTCTTTGAATTGTGACTCAGCCTTGTCAGGACTAAACTTCAGTATTCCTGATTTGGACGTTGTTATGAAGTTTGTGGACAGGAAGTACCTTAGCTCTTGCAAAACTGTTGACCCTCCATTTTCTACGGCAAAGCTATTGAATGATCTTTGTAGTATTTTTCTCAAGTTGGGGCTTCGAAAGGGATCAAATTCCAACCAGGCCAATTCGCATTCACTACAATACGTTATTCAAGGAGAAAGGAAACCCTTTAATTTTATCAGTGACATAACAAAAGGTTCAGAAAAGGTGAAAATATCATTAATAGATGAATTTGGTAGTGACGCCTTGCCAAAGTTTAATTACATACCATACAATACAATATATCAAAGTGCTATTGTAAATATTTCTTTGGCCCGGATTTCGGATGAGGGTTGCTGTTCTGATTGTTCAGGCGACTGTCTTTCCTCATCATTGCCTTGTGCGTGTGCTCGGGAAACTGGTGGAGAGTTTGCTTACACTCCTCAAGGTTTGTTGAAAGAAGAATTTCTAAAAGCTTGCGTGACTATGAAGAATGAACCCCAAGAACATCATTATGTGTACTGTCAAGAGTGCCCTTTAGAGAAGTCCAAGAACGAGTACATGCCTGAACGATGCAAGGGGCATATGGTTAGGAAATTTATAAAGGAATGTTGGAGGAAATGCGGATGTCACATGCTTTGTGGGAATCGATTAGTGCAACGAGGTATTACATGCAAATTGCAGGTGTTCTTAACTCGACAAGGTAAAGGTTGGGGCCTTAGAACGTTAGAAGATTTGCCAAAAGGAACTTTTATATGTGAATATGTTGGAGAAATATTAACCAATATGGAGTTATACGATAGAATTATGGAAGAGAGTTGGAATGAAAGACATACATATCCTTTAACTCTTGATGCGGACTGGGGCTCAGAAAAGGGGTTAAAGGATGAGGAGGCACTATGTTTAGATGCAACATATAATGGAAATGTTGGAAGGTTCGTCAATCATAGATGCTATGATGCAAATCTCATAGACATTCCCGTTGAAATAGAGAGTCCGGATCACCATTATTATCATCTTGCCTTCTTTACCAACAAGAATGTGAGTGCGTATGAGGAATTGACATGGGATTATGGTATTGATTTTGATGATGAAGATCATCCTATTAAAGCATTCCGGTGTTCTTGTGGAAGCACCTTATGCCGTGATAAGAAACAAAAAGGTTAG	1938	0.3963	MAPTGRAEKAFSFMMTLGISMEEVKPVLIKLLRVYEGNWELIEDDTYRTLVDAYFDFDKDKVVEGERKPNGSGYGGQNSTGEPSLVDSDDCHLLTIDSSSKMLSLEDRKISSKNFERKNIKPSQTITEDVKPKISSQASHSTFSEVEKISNLPRGAAKDGESYPEKASSAGPRGQFENNTVKPRAKKPKLLTSTNHNGDICVKPLSTQDQDLHSKNVVPACISNITIASSSRLEEVKMSLNCDSALSGLNFSIPDLDVVMKFVDRKYLSSCKTVDPPFSTAKLLNDLCSIFLKLGLRKGSNSNQANSHSLQYVIQGERKPFNFISDITKGSEKVKISLIDEFGSDALPKFNYIPYNTIYQSAIVNISLARISDEGCCSDCSGDCLSSSLPCACARETGGEFAYTPQGLLKEEFLKACVTMKNEPQEHHYVYCQECPLEKSKNEYMPERCKGHMVRKFIKECWRKCGCHMLCGNRLVQRGITCKLQVFLTRQGKGWGLRTLEDLPKGTFICEYVGEILTNMELYDRIMEESWNERHTYPLTLDADWGSEKGLKDEEALCLDATYNGNVGRFVNHRCYDANLIDIPVEIESPDHHYYHLAFFTNKNVSAYEELTWDYGIDFDDEDHPIKAFRCSCGSTLCRDKKQKG*	646

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac6g01478	645	ProSiteProfiles	Pre-SET domain profile.	376	479	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Phac6g01478	645	Gene3D	SET domain	327	641	IPR046341	-
	Phac6g01478	645	SUPERFAMILY	SET domain	334	639	IPR046341	-
	Phac6g01478	645	MobiDBLite	consensus disorder prediction	120	148	-	-
	Phac6g01478	645	MobiDBLite	consensus disorder prediction	120	180	-	-
	Phac6g01478	645	ProSiteProfiles	Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile.	1	644	IPR025776	-
	Phac6g01478	645	Pfam	SET domain	494	616	IPR001214	GO:0005515
	Phac6g01478	645	SMART	set_7	482	622	IPR001214	GO:0005515
	Phac6g01478	645	SMART	preset_2	324	466	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Phac6g01478	645	Pfam	Ubiquitin-binding WIYLD domain	5	56	IPR018848	-
	Phac6g01478	645	FunFam	SET-domain containing protein lysine methyltransferase family protein	327	641	-	-
	Phac6g01478	645	Gene3D	-	1	60	IPR043017	-
	Phac6g01478	645	ProSiteProfiles	SET domain profile.	482	616	IPR001214	GO:0005515
	Phac6g01478	645	MobiDBLite	consensus disorder prediction	65	87	-	-
	Phac6g01478	645	Pfam	Pre-SET motif	327	474	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Phac6g01478	645	CDD	SET_SETDB-like	348	616	-	-
	Phac6g01478	645	PANTHER	INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED	1	644	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac6g01478	Phac-Chr6	16995690	17008597	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac6g01478	323	639	Su(var)3-9 homologs	AT5G04940	29.080	1.56e-30	125

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Phac6g01478		Pre-SET	1.7e-15	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac6g01478	-		-	vun:114188074	1061.98