Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01440 ATGACTACTGCTATGGAGGCAGAGCGAGACAAGTACAAGATGATCGATTTCGAAGAAACCGAGTTGCGACTCGGGCTGCCGCTCAGTGCAAACGAGACCGAGTCCACGCTCATCAGAAACACTTCCACTGCTTCCTTTACTGGGAAGAGAGGGTTTTCCGATACAACCACTGCTAGCGTGGATTTGAAGCTTAACCTTTCCTCAACCTCAAACAATGTCTCCGCCTCACCCTCTTCCGACATGGCCAAAGACAACACCGCTTCTGCTGCTGCTAACACTACTACATCCCCTTCTCCTCCTGTTAAGGACCCAGCAAAGCCACCTGCAAAGGCACAAGTGGTGGGTTGGCCACCAGTGAGGTCATTCCGAAAGAACATCGTTAACAATAATGTTCAAAAGAGCAACAACAAAGAGGAGGTACAAGGTGGTACAAGTGGCAGGAACCATGGGAACACGGGAGCAGCTTTTGTTAAGGTGAGCATGGACGGTGCTCCCTATCTACGTAAGGTAGACTTGAAGGTGTACAAGAGCTATCAAGAGCTGTCGGATTCACTGGCAAAAATGTTCAGTTCATTCACCATTGACAAGTGTGAATCCCAAGGCATGAAAGACTTCATGAACGAGACCAAATTGATTGATTTTCTCAACGGCTCTGATTATGTACCAACCTATGAAGACAAAGATGGAGACTGGATGCTCGTGGGTGACGTACCCTGGGAAATGTTCGTGGAATCCTGCAAGCGCCTGCGTATAATGAAAGGATCTGAGGCAATCGGGCTTGCACCCAGAGCAGTGGAAAAGCGCAAGAACAGAAGCTAG 819 0.4872 MTTAMEAERDKYKMIDFEETELRLGLPLSANETESTLIRNTSTASFTGKRGFSDTTTASVDLKLNLSSTSNNVSASPSSDMAKDNTASAAANTTTSPSPPVKDPAKPPAKAQVVGWPPVRSFRKNIVNNNVQKSNNKEEVQGGTSGRNHGNTGAAFVKVSMDGAPYLRKVDLKVYKSYQELSDSLAKMFSSFTIDKCESQGMKDFMNETKLIDFLNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKRKNRS* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01440 272 MobiDBLite consensus disorder prediction 68 113 - -
Phac6g01440 272 Pfam AUX/IAA family 19 263 IPR033389 -
Phac6g01440 272 ProSiteProfiles PB1 domain profile. 154 254 IPR000270 GO:0005515
Phac6g01440 272 FunFam Auxin-responsive protein 149 264 - -
Phac6g01440 272 MobiDBLite consensus disorder prediction 68 99 - -
Phac6g01440 272 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 259 IPR003311 GO:0005634|GO:0006355
Phac6g01440 272 SUPERFAMILY CAD & PB1 domains 149 253 - -
Phac6g01440 272 Gene3D - 149 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01440 Phac-Chr6 16793792 16797156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01440 138 262 B3 DNA Binding Superfamily AT4G23980 31.200 9.10e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Phac6g01440 AUX_IAA 7.2e-87 CL0072