Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01425 ATGGAGAGCGCACGGCAACCCCTGGAATTCTTCAAAGTATTCCTCCTTAACAAAGCTTCTACCCAGTTGCAAATACCAACATCTTTCACTAAGTTCTTCAATGGAATCGCACCATGCAAGATCATTCTTATTGATCACGATGGAAAATGTTGGGATGTTAAGTTGGAGAAAATCGAGGGTCGTTTGGTTTTTAAAAATGGGTGGCAGCAATTTGCCAAGGAGAAAAATTTAGAAGAAGGGGACTTTTTGGTTTTTCAGTATGATGGCATGTCGACCTTTAATGTGAAGATATTTTCGAAAACTGGGTGCAGGAAAGGGGCTACACCTCCAAGCCGTGAAAAAGTTGTTCCCATTGTGAATTTGGAAGAAGATTCTGAGGAGTTTAGTAATAAAATCCAGAGCAATGGTATAGGGAAACGCTCACTGCCAAATACCAAAATAGAAGTGAAATCAGTCTTAGAAGGGGCATGTACATCTGAAGGAGCTCGGCGCAGATCAAAAAGACTGAAGGAAGAAAAAGATAAACTAAATGACAAGAAACTTGCTCGGAATAAGAATGTTCCATTGCAGAATCCTCATTTTCAAATATATTTTGATTCTCCCTGGAGACTGAAAAGAGTGGAAATTCCTAGAAAAGTGATTAAGAACATGGAAATCAAGTTGGTCCGGAATATAACTCTTAGGGATGAGAATGACAGGTCGTGGCCGGTGTCGATCATTTCCACAACGAATCAAGACCGTCGTTATTTGGGAGGTGGATGGTTGGATTTCAAGCAGAGCAACAACATTGAAGAAGGGTGTCATTGTGATTTTCAGTTTGTGGTTGACAAAGCAAACGTAGCCAAAGAACTGCTTGTGCGCGTACGTTCGAAGGGTGGACTGCAGATAGTTTAG 894 0.4105 MESARQPLEFFKVFLLNKASTQLQIPTSFTKFFNGIAPCKIILIDHDGKCWDVKLEKIEGRLVFKNGWQQFAKEKNLEEGDFLVFQYDGMSTFNVKIFSKTGCRKGATPPSREKVVPIVNLEEDSEEFSNKIQSNGIGKRSLPNTKIEVKSVLEGACTSEGARRRSKRLKEEKDKLNDKKLARNKNVPLQNPHFQIYFDSPWRLKRVEIPRKVIKNMEIKLVRNITLRDENDRSWPVSIISTTNQDRRYLGGGWLDFKQSNNIEEGCHCDFQFVVDKANVAKELLVRVRSKGGLQIV* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01425 297 ProSiteProfiles B3 DNA-binding domain profile. 8 101 IPR003340 GO:0003677
Phac6g01425 297 SUPERFAMILY DNA-binding pseudobarrel domain 190 274 IPR015300 -
Phac6g01425 297 SMART B3_2 10 101 IPR003340 GO:0003677
Phac6g01425 297 SMART B3_2 194 292 IPR003340 GO:0003677
Phac6g01425 297 MobiDBLite consensus disorder prediction 161 184 - -
Phac6g01425 297 CDD B3_DNA 203 266 IPR003340 GO:0003677
Phac6g01425 297 CDD B3_DNA 10 99 IPR003340 GO:0003677
Phac6g01425 297 Coils Coil 159 179 - -
Phac6g01425 297 MobiDBLite consensus disorder prediction 161 182 - -
Phac6g01425 297 SUPERFAMILY DNA-binding pseudobarrel domain 6 103 IPR015300 -
Phac6g01425 297 Gene3D - 3 103 IPR015300 -
Phac6g01425 297 Gene3D - 187 288 IPR015300 -
Phac6g01425 297 ProSiteProfiles B3 DNA-binding domain profile. 192 292 IPR003340 GO:0003677
Phac6g01425 297 Pfam B3 DNA binding domain 10 100 IPR003340 GO:0003677
Phac6g01425 297 Pfam B3 DNA binding domain 204 291 IPR003340 GO:0003677
Phac6g01425 297 PANTHER B3 DOMAIN-CONTAINING 5 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01425 Phac-Chr6 16712526 16714580 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01425 1 290 B3 DNA Binding Superfamily AT5G66980 28.660 1.79e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phac6g01425 B3 2.1e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01425 - - var:108345771 385.185