Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01424 ATGGAGAGCGCACGGCAACCCCTGGAATTCTTCAAAGTATTCCTCCTTAACAAAGCTTCTACCCAGTTGCAAATACCAACATCTTTCACTAAGTTCTTCAATGGAATCGCACCATGCAAGATCATTCTTATTGATCACGATGGAAAATGTTGGGATGTTAAGTTGGAGAAAATCGAGGGTCGTTTGGTTTTTAAAAATGGGTGGCAGCAATTTGCCAAGGAGAAAAATTTAGAAGAAGGGGACTTTTTGGTTTTTCAGTATGATGGCATGTCGACCTTTAATGTGAAGATATTTTCGAAAACTGGGTGCAGGAAAGGGGCTACACCTCCAAGCCGTGAAAAAGTTGTTCCCATTGTGAATTTGGAAGAAGATTCTGAGGAGTTTAGTAATAAAATCCAGAGCAATGGTATAGGGAAACGCTCACTGCCAAATACCAAAATAGAAGTGAAATCAGTCTTAGAAGGGGCATGTACATCTGAAGGAGCTCGGCGCAGATCAAAAAGACTGAAGGAAGAAAAAGATAAACTAAATGACAAGAAACTTGCTCGGAATAAGAATGTTCCATTGCAGAATCCTCATTTTCAAATATATTTTGATTCTCCCTGGAGACTGAAAAGAGTGGTTGGTTATTTTATTTTTTTACGTAATTTACAATTTAAGCAGTTACTTTACTCTGACTTAAATGTAAACTAG 693 0.381 MESARQPLEFFKVFLLNKASTQLQIPTSFTKFFNGIAPCKIILIDHDGKCWDVKLEKIEGRLVFKNGWQQFAKEKNLEEGDFLVFQYDGMSTFNVKIFSKTGCRKGATPPSREKVVPIVNLEEDSEEFSNKIQSNGIGKRSLPNTKIEVKSVLEGACTSEGARRRSKRLKEEKDKLNDKKLARNKNVPLQNPHFQIYFDSPWRLKRVVGYFIFLRNLQFKQLLYSDLNVN* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01424 230 ProSiteProfiles B3 DNA-binding domain profile. 8 101 IPR003340 GO:0003677
Phac6g01424 230 PANTHER B3 DOMAIN-CONTAINING 5 173 - -
Phac6g01424 230 Pfam B3 DNA binding domain 10 100 IPR003340 GO:0003677
Phac6g01424 230 SUPERFAMILY DNA-binding pseudobarrel domain 6 103 IPR015300 -
Phac6g01424 230 SMART B3_2 10 101 IPR003340 GO:0003677
Phac6g01424 230 Gene3D - 3 103 IPR015300 -
Phac6g01424 230 CDD B3_DNA 10 99 IPR003340 GO:0003677
Phac6g01424 230 MobiDBLite consensus disorder prediction 163 182 - -
Phac6g01424 230 Coils Coil 159 179 - -
Phac6g01424 230 MobiDBLite consensus disorder prediction 163 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01424 Phac-Chr6 16712526 16713976 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01424 1 105 B3 DNA Binding Superfamily AT5G66980 43.119 4.97e-20 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phac6g01424 B3 8.3e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01424 - - var:108345771 276.559