Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01420 ATGGAGCAGTATGAAGTGCTTGAGCAAATTGGAAAAGGCGCCTTTGGTTCTGCTCTTCTTGTGAAGCATAAGCATGAGAAGAAAAAATATGTGCTGAAGAAGATTCGCCTTGCTCGCCAAACTGAGCGCTCTCGTAGGTCTGCTCACCTGGAGATGGAACTCCTCTCCAAATTAAGAAACCCATTTATCGTAGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTATGCATTATTATAGGTTATTGTGAGGGTGGAGACATGGCGGAAGCTATAAAGAAAGCTAGTGGCGTTATGTTTCCCGAGGAGAAACTATGTAAGTGGCTTGTGCAGCTTCTTATGGCGCTTGATTACTTGCATGTGAACCACATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCATGACATGCGCCTTGGTGATTTTGGACTTGCTAAAATGTTGACTTCCGATGATCTAACTTCCTCTGTTGTGGGAACTCCTAGCTACATGTGCCCTGAACTCCTTGCTGATATACCTTATGGCTCTAAATCAGATATTTGGTCCCTTGGATGTTGTATATATGAAATGACCTCGCTTAAGCCTGCATTCAAAGCATTTGATATACAGGCCCTGATTAACAAAATTAATAAGTCGGTAGTGGCTCCATTGCCAACAAAATATTCTGGTGCATTTCGGGGTCTTGTGAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGACCTAGTGCTGCAGAGCTACTCGGGAATCAACATCTTCAACCTTATGTTCTTAAGGTCCATCTCAAAATCAATAACCCAAGGCGAAGTACTTTGCCAGGTCTTTGGCCAGAATCCAACTACACGAAGAAAACTAGATTTTTGAAGTCAGAAGATGATCGTGTTTCTGTCTCTGGGTATAAGTGGCATTCTTTTAGCAATGATAGGACTTTAAATCCCAGTGTATCAGGAGCGGAGCTAGATTCTCTATGCTCTACGCTAGAGATAGACTGTACTCCTGATAATTTAAATCAAAGATTTGCTGAACTTTCTATTGGAGACAACCAGGATTTGAAGTCACTCCATAAGTCAGCTGTTCCGAGAGCTGTTTCAAGAACTTCTAGTAATGCCAGGACTCCTAGGTTAACTGCATCAAAAGCTTCTGCCAGCCCCAAGAAATCAATGGTATCCTCAAAGAATCATAAGACGCTTCCTGTTTCACACAATATGAAACTACCTGTCCATACAACTCGCAGAGCGTCATTGCCATTCCCACGAAGTTGTGCCATTCAGCTTCCTCCTCGCAGGTCCAGTACTGGTTTACTTTGCCATGTAAATTCACCCAATATTTCAGTTAACTCTCCCCGGATTGATAGGATAGCAGAATTCCCATTAGCATCATATGAAGACCAATTGTTTCCCATAAATAGATCTTCACCAAACCCGGCAAAGGGTTCCTCAGGTTCCCCTCCTTGTGGCAATGATTCAACTTTGATAGACAAATGCACAATCAAGGTATGTGACACATCCTATGTTAGGCCAGGATGTACAGATGCTTGGCAGGGAATCAAGCGCAGCATGCTCAAGAAAAACAATGAGGATAAAAGTGGCTCATCTAATCAAAATGCAACAGCTGGAGCATCAAGCGACAACTCTTCAGACGTGCACTGCCGGCAGTTTGATACTTCGTCATTCCAACAAAGGGCAGAGGCATTAGAAGGTTTGCTTGAATTTAGTGCAAGATTACTGCAGCAGGAAAGATACGGAGAACTTGGAGTTTTATTAAAACCGTTTGGGCCAGGGAAAGCTTCCCCAAGGGAAACTGCTATTTGGTTGAGCAAGAGTTTCAAAGAGAACACTTTCAGCCGAGAACAACCCACTTAA 1878 0.4265 MEQYEVLEQIGKGAFGSALLVKHKHEKKKYVLKKIRLARQTERSRRSAHLEMELLSKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKASGVMFPEEKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKDHDMRLGDFGLAKMLTSDDLTSSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSLKPAFKAFDIQALINKINKSVVAPLPTKYSGAFRGLVKSMLRKNPELRPSAAELLGNQHLQPYVLKVHLKINNPRRSTLPGLWPESNYTKKTRFLKSEDDRVSVSGYKWHSFSNDRTLNPSVSGAELDSLCSTLEIDCTPDNLNQRFAELSIGDNQDLKSLHKSAVPRAVSRTSSNARTPRLTASKASASPKKSMVSSKNHKTLPVSHNMKLPVHTTRRASLPFPRSCAIQLPPRRSSTGLLCHVNSPNISVNSPRIDRIAEFPLASYEDQLFPINRSSPNPAKGSSGSPPCGNDSTLIDKCTIKVCDTSYVRPGCTDAWQGIKRSMLKKNNEDKSGSSNQNATAGASSDNSSDVHCRQFDTSSFQQRAEALEGLLEFSARLLQQERYGELGVLLKPFGPGKASPRETAIWLSKSFKENTFSREQPT* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01420 625 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 575 - -
Phac6g01420 625 MobiDBLite consensus disorder prediction 531 554 - -
Phac6g01420 625 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Phac6g01420 625 Gene3D Transferase(Phosphotransferase) domain 1 84 271 - -
Phac6g01420 625 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Phac6g01420 625 ProSiteProfiles Protein kinase domain profile. 4 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac6g01420 625 MobiDBLite consensus disorder prediction 528 554 - -
Phac6g01420 625 SMART serkin_6 4 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac6g01420 625 Pfam Protein kinase domain 4 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac6g01420 625 SUPERFAMILY Protein kinase-like (PK-like) 1 259 IPR011009 -
Phac6g01420 625 MobiDBLite consensus disorder prediction 365 399 - -
Phac6g01420 625 FunFam Serine/threonine-protein kinase Nek2 84 274 - -
Phac6g01420 625 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Phac6g01420 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Phac6g01420 625 MobiDBLite consensus disorder prediction 363 399 - -
Phac6g01420 625 CDD STKc_Nek 3 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01420 Phac-Chr6 16694587 16700338 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01420 10 259 MAP Kinase Kinase Kinase AT1G53570 30.980 8.36e-34 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Phac6g01420 Pkinase 2.6e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01420 K08857 - gmx:100796019 1124.77