Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01318 ATGAAGAAACACCATCATCACGCAACCCTATTCCTACTCCTCCAATTCCTGCTGCCGTCAATTCCAATCGCCGTCGCGCAGGGCCAGCCCCAGCCCGATCAATACACCGACCCAAACCTAAACCGCTTCAACCCCTCTCTAGCCGCAATCATCGTCATATTAGTGGCGGCGCTTTTCGTCATGGCCGTTTTCTCCATCTACGTACGCCACTGCGCCGATGCGCCTTCCAACAGCGTTAGGCCTCTCACCTCCGCACGCTCCAGAAGAGTCGCGCGTGGCCTTGACCCCGCCGTCATCCAAACCTTCCCCACCCTCGAATACTCCGAGGTCAAGATCCACAAGATCGGAAAAGAAGACTTGGAATGCGCGGTGTGTTTGTGCGAGTTTGAGGACTCCGAAACGCTGCGTTTGATCCCCAAGTGCGACCACGTTTTCCACCCCGAGTGCATAGACGAGTGGTTGAGCTCCCACACCACGTGTCCCGTGTGCCGCGCCAACCTCGTACCAACAGAATCCATGGATTCTGACGCCAACAACGGCGCTGATGCTGTTCCCGATCCTCAATCGTTAACGCCAGACGTTGAAGCCCAAAACGACGCAGTCGAAGCCGCGCCGGAGCAGCAAAACGCGGACTCTGACCGTTTCTTAACCGAACCGGAAGTTCTTTCTCTGGAAAAAACGCTGAACCGGAACCGCACACGTGGATCGCGGTCGAACCGACTTCGCCGGTTCTCGAAGTCGCATTCGACTGGGCACTCGATCGTCCAACCGGGCGAAAACACTGACCGGTTCACTCTGAGACTTCCTTTGGAGGTTCGCAAGCAGATAATAAACCGGCAATTGCATCGTGCAAGTAGCTTGATCGTGTTACCGAGAGAAGGTAGTTCGAGGCAGGGTTACCGAACCGGAGGGGAAGGGAGTAGTAGGGGGAAACAGTCAAGGCGGTTGGACCGGAGTTTGAAATCGGACCGATGGATTTTCTCGATAGCTGCGCCGTTTTTCGCAAGGGCGCTGTCTATTAGGTCCCCCAGGGTGCGCAATAACGATGTTGAAGGAACGTCGTCGTCTTCCACCGCGCCGATTATGCCGCGGACGGCCGTTGACTCGGCTCGGCCACCGGTTTAA 1125 0.5636 MKKHHHHATLFLLLQFLLPSIPIAVAQGQPQPDQYTDPNLNRFNPSLAAIIVILVAALFVMAVFSIYVRHCADAPSNSVRPLTSARSRRVARGLDPAVIQTFPTLEYSEVKIHKIGKEDLECAVCLCEFEDSETLRLIPKCDHVFHPECIDEWLSSHTTCPVCRANLVPTESMDSDANNGADAVPDPQSLTPDVEAQNDAVEAAPEQQNADSDRFLTEPEVLSLEKTLNRNRTRGSRSNRLRRFSKSHSTGHSIVQPGENTDRFTLRLPLEVRKQIINRQLHRASSLIVLPREGSSRQGYRTGGEGSSRGKQSRRLDRSLKSDRWIFSIAAPFFARALSIRSPRVRNNDVEGTSSSSTAPIMPRTAVDSARPPV* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01318 374 MobiDBLite consensus disorder prediction 346 374 - -
Phac6g01318 374 MobiDBLite consensus disorder prediction 290 316 - -
Phac6g01318 374 SMART ring_2 122 163 IPR001841 -
Phac6g01318 374 CDD RING-H2_EL5-like 121 164 - -
Phac6g01318 374 MobiDBLite consensus disorder prediction 173 192 - -
Phac6g01318 374 Pfam Ring finger domain 121 164 IPR001841 -
Phac6g01318 374 MobiDBLite consensus disorder prediction 233 247 - -
Phac6g01318 374 FunFam E3 ubiquitin-protein ligase ATL6 82 170 - -
Phac6g01318 374 SUPERFAMILY RING/U-box 114 170 - -
Phac6g01318 374 MobiDBLite consensus disorder prediction 346 363 - -
Phac6g01318 374 MobiDBLite consensus disorder prediction 197 258 - -
Phac6g01318 374 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 29 258 - -
Phac6g01318 374 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Phac6g01318 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 170 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01318 Phac-Chr6 16097907 16099403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01318 1 359 Rapid Response to Elicitors AT3G05200 41.791 3.15e-89 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01318 K10664 - gmx:100781706 555.829