Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01286 ATGTCAGATTCACAGTCCAGTACTGAGATCTTCACCGTTCGGATTGTCTCCATCGACTATTATATGGCGCCGCCAATCCCCGACGCCGATATCTGTTATAGTAGCTTCCACGGTGGAAAGGTGAACGAGGTTCCTGTGATAAGAGTGTATGGTTCTACTCCTGCTGGCCAGAAAACTTGCTTGCACATGCATCGAGCTTTACCCTATTTGTATGTGCCGTGTTCGGATATACCACTTCAACTGGACCAAGGTGATGCATTCACCTATAAGGTAGCTGCGTCTCTTGAGAAAGCCTTAAAGCTTAAAGGCAGTGCTGGTTCGACAAGACAACATGTACATGGATGCAGCATTGTACAAGCAAGGAAATTTTATGGCTATCATTCACATGAGGAGTTATTTGTAAAGATATACTTATATTATCCTCAAGATGTTTCCCGTGCAGCTAGTCTTCTCTTGGCTGGTGCTGTTCTTGATAAAAGTTTACAGCCATATGAATCACATATTCCCTTCATTCTTCAGTTTCTGGTTGATTACAACCTGTATGGCATGGGTCAATTGCACCTATCAAAGATGAAGTTCCGCCACCCCTTACCCGACACATGCAAGAAATTAAATATTGATGGCCAGCATAGAAAGGCAGATCCACTTGCTCATGCATGTTTAGAGTCAAAATTGTGGGTGTCTTCCATGATTCCATCTGAGTGGATATGGTTAGCCCCAAGCAAATCCAGTGCTTCTTCAAAAGATGAGGCTCACTGTCCTAAACGCCAAAGCATCTGTGAGCTTGAAGGAGATTCTTCTGTGGATGAGATTCTTAATCAGCAGTTTAAAATGTATTCATCTCTCTCACAAACATGCTCAGATGTCAACATGGTTCAGTCACTTGTACCAATATGGGAGGAACAACAGAAACGGACTGGGATTCATGAGGCTACCATGCCTTCTGATCCTGGCAAACCACTTCCAGAAGAAGTTATGAAACTTTTCTCTGTTGGTCTTGACTTTGAGAAAAAATTTATTGAATTATGCAGTGAAGCTGGAACCTCTTTATTTTGTACTCCTCCTGGGAATGAGTGGAGTGAAACAGACATAATAGGCTCAGCATCACCCCCTGCTACATTATGCAAAAATGCCAAATTGCAAAAGGAAGGGACTGACGCCAATCTTGAAATGTTGACTATGGGTGAAATTCAGTCAACTGAAATGATTGGATCAATGGACATAAAGGCTGCTGATAAGGAAGCGAAAAATCTTCTTAAGTGGCTTGCAACTTCTCAAGCTGCAGAGGATATAAACTCTGATGATGAACTTGCTTACGAAACAATCTTGACTCCCTTGTTGCCTGCTGCAACAATTGATAAGGTGCTGGAGGAAGCTAATATGGCTTATGAGAGTGAGTCCCAGAAGGAGTGTCAGGATATTCTAGATTCAACCGAGGATATGCTTGAGTTGGAGTTACCAAAGGAAAAACCTTCTCTTTCCTTTGATAACAATTATAGTATTGAAACTTCATCAAACATAAAATTACCCCAAGTTGATGGTTCTAATGATGATGAGTTCTCAGGTCAATGCGGTGGTCTGGCTGGATCCTCTTCTCTACCCGAGATAAACAGTGAATTCAAAAGTGCTTCTGAGTACCATGTTCTGCACACTACTGGCACAAGTACAGTTAGAAAAGATATAAGGAACAAAAAATGGGGGTCTTTGCCTCTATCCACAATTGATCAGGTTAATAACAACGGAGAACGAGCTACTTTACTTGTGACTCATCCAGTTGAAAGTGATATTGGAGATTATGCTCGCTCAGATCGCCTGAACATAAATGAGGTTAGAAATAGTGCTTGTATTACAAGGAACAAGGACAAAAATGGTTCAGATTCAAAAGAAGTACACACATCAGGTAACTGTTCTTTACGGGACTTGATGAGGCGAAAGCGATTTTACCGAGTTGAACAAGCTGAAGAAGAGCCTGGAACTACTAAAAAGCTTCTTTTAGACAGACATGAGGAACCAAATGAATGCTTTTGGCAAAAACAACTGGATTTAAAAACAATGCAAACTGATGAAGAAGAAATGGAAGACCAAAATGCTAATTTATTTCATGGGAAACTGCTCCTTTCAACTGGAATTGACAGTCGTTCACAAGCTGGTAGGTCAAAAGATGGATGTTTTGAACAACATGAAATGGAAGGTATAGAAGCAAATGCAGAGTTGAGGAACTGTACAGAAGGAGGTTCTGCTTTAATGCATGATGGACCAGGCCTCCATAATCCCGAGAGGAGTCCACAAACTGATTCTTCTGCTTCAACTAGTGTGCAAAACTCGTTCATTATTGATAGCGTGTCTAGTAAATATAATTTTGTGAATCAAAGTTCTCCCCAAAGCTTATCATTTGTGCAACATGATCAGATGACGTTTTGTGAGAATTCTGTGAAGAAAAGTGATGCAAAGGATGTGCAAGTATTGTTTAGTGAAAAGGTGGATAATCAAAAGGTGGGTGAAAATTTGCTGCATGAGATTATTGGCTCCGAACCCACCGACCTAAAGGGTAATCACATGAAATTAACTGAAATAACCACAAGCAAGAACCCTCCGGCTGATGAGAATCTTGAAAGTAGAACAACCTCTAATACCCATTTACATTTGGTTGAAGACAGCTCAGATGAAATGCCAGGGGATGATCTGGATGTATTTCTTCCGATTTCTGCAAGGATTTCTAAGAAAGGGATGGAAACTTGCAATGAGTATGTTACAAATAAAACCTTTACATCTAATGGGACAAAGGTTGCCACCACTCACTATCAAAATGATGGCTCTCACCTGTACCTATTAACACCTAAAATGTTGCCTCCTTCTGTGGATACTGTGCATAGATGGCTACTTTGTAATGAGAGAGGGCATATTCCTGATCATGTACATCAAGAACCAGATGCAGAGAACAAGGATAAATGTGCTTCTGAGACTGAACCTCCTCTTATGCCTAAGCTGCATGTAGATGCTGATACAGAAAAGAGGGCTCCGTGCAATGGAGAAGGACAAACAGAAAGAGTGAAAATACACCTAGATGACTCACAAGATACTCCTCAGATATCAGCCCCGGATGGAAAATCAATCTTTACCCCTCTAAGTCAAACTGGATTTCGAGACCCTGCAAGTGTTGGCTGTGGACAGCAACTGACATTACTTAGTATAGAGATTCTTGCAGAATCTAGAGGAGAACTTTTACCTGATCCTCAATTTGATGGCATCAACATTATAGCTCTTGGTTTTCAGAACGATAGTGATTCTATTATTGAAGTTCTAGTTCTTCTACACAGTAAATTTGTACCTTGTCGGAGAAATGTCGATGGTCTATCTGGCTCGAAAGTATTGGTCTTCACCGATGAGAAGCTATTGTTAAAAGAATTTATAAAGATTGTGTCTTCATCTGACCCAGATATTTTGATGGGTTGGGATATTCAAGGGAGTTCTCTTGGTTTTCTAGCAGAAAGAGCATCTCATCTTGGTTTGGGATTACTTAATAATCTGTCTCGCACTCCTTCTGAGTCTTTGAATTCTTCTGAAGATATGAAAACTTCTGAAAAAGAAATCTTGGAGCTGGACATTCATGACACGCCTAGTTTAGATTGTTGTGTGCCAGAAAATTCAGTAATTGAGGATGAATGGGGACGGACACATGCTAGTGGAGTTCATGTAGGAGGCAGAATTGTCCTTAATGTATGGCGATTGATCCGTGGAGAAGTTAAGTTGAACTTATATTCTGTTGAATCTGTTGCTGAATCTGTTTTGAGGCGGAAAGTTCCTTCATTTCATCATAAAGTGCTGACAAAATGGTTTTCAAGTGGTCCTGGACGAGCCAGATATCGGTGTATCAAATATGTTATAGAGAGAGCAAAGCTGAACCTAGAGATATTAAACCAACTTGATATGGTGAATCGAACATCAGAACTTGCTCGTGTCTTTGGGATAGAGTTTTTCTCTGTTCTCTCTCGAGGATCACAATACCGTGTTGAATCCATGTTTCTGAGGTTGGCCCATACACAAAACTATCTTGCTATCTCACCTGGAAATCAACAGGTTGCTTCTCAACCTGCTATGGAGTGCCTTCCTCTAGTAATGGAACCAGAATCTGGATTTTATTCAGATCCTGTTGTTGTGCTTGACTTCCAGTCTTTATATCCATCCATGATAATTGCATACAATCTTTGCTTCTGCACTTGTCTGGGTAAAGTTGTGGGATCAAAGGCCAATACACTTGGGGTTAGTCCATTCTCACCAGAGCAACATGTCCTGCAGGAGTTAAAGGATCAAATCTTGCTCACTCCAAATGGTGTTATGTTTGTACCTTGCAAGGTTCGAAGAGGTATACTGCCCCGCTTATTGGAAGAAATCTTAACTACTAGAGTTATGGTAAAACAAGCAATAAAAAAATTGGCTCCTACAGAGAAAGTTCTTCAACGGATATTTAATGCGAGACAGCTTGCTTTGAAGCTCATAGCGAATGTAACATATGGCTACACTGCTGCTGGATTTAGTGGTCGCATGCCCTGTGCAGAACTTGCAGACAGTATTGTCCAGTGTGGTCGTAGTACACTGGAAAATGCTATATCATTTGTAAATCTACATGAAAAGTGGAATGCTAGAGTTGTCTATGGGGATACTGATAGTATGTTTGTTCTCCTTAAAGGACGCACTTTGAAAGAGTCTTTCCAAATTGGAAGTGAGATTGCCTCTTCCATCTCTGCTATGAATCCTAACCCTGTCTCCCTGAAGATGGAGAAAGTTTATCACCCATGTTTCCTTCTTACTAAGAAACGATATGTTGGCTACAGTTATGAAAGTCCTCATCAAACTGAACCAGTTTTTGATGCTAAAGGTATTGAGACAGTTCGCAGGGACACATGTGGTGCAGTTGCAAAGATAATGGAGCAGTCTTTGAGGCTCTTTTTTGAGCAACAGGATTTATTGGAGGTGAAGACTTATTTGCAACGTCAGTGGAAGAGGATTCTTTCGGAGAAATTCTGCCTTAAAGATTTTATCTTTGCAAAGGAGGTTCGCTTGGGTACCTACAGTGCAAGAATGTCATCACTTCCTCCTGCTGCAATTGTGGCCACTAAGGCAATGATGGTTGACCCTAGGGCAGAACCACGTTATGCTGAGAGAATACCCTATGTTGTAATCCATGGAGAGCCTGGAGCCCGGTTGGTTGATATGGTTGTGGATCCATTGGAAGTTTTGGCAATTGATTCCCCGTTTAGAATAAATGATTTATATTATATTAATAAACAAATAATACCAGCTTTACAGCGGGTATTTGGACTTGTTAATGCTGACCTCAACCATTGGCTTTTAGAGATGCCTCGTCCCACAAGGGAAGCTTCTGCAAAGCATAAATTAACTTCAAATTCCCATCGAACCCGAATTGATTATTACTATCTTTCAAAACATTGTGTATTATGTGGTAGGTTGGTCCAGGCATCAGCCCGTTTATGCAGTCAATGTTCTGAAAATGAAGTAGCTGCTGCAACAGCAGTAATTAGTAAGACTTCGAAGTTAGAGAAAGAGATGCAACATCTTGTTGCTATATGTCACCATTGTGGAGGCGGGGATAGGCTTCTTGAAAGTGGTGTGAAATGCACGTCCATTTCATGCTTGGTGTTCTTTGAGAGGCGGAAGGTTCAGAAAGAACTGCTAGCTGCCACCCATATTGCTGCAGATACAGACTTGTACCCGAGATGCATAGTGGAGTGGTTCTGA 5757 0.4099 MSDSQSSTEIFTVRIVSIDYYMAPPIPDADICYSSFHGGKVNEVPVIRVYGSTPAGQKTCLHMHRALPYLYVPCSDIPLQLDQGDAFTYKVAASLEKALKLKGSAGSTRQHVHGCSIVQARKFYGYHSHEELFVKIYLYYPQDVSRAASLLLAGAVLDKSLQPYESHIPFILQFLVDYNLYGMGQLHLSKMKFRHPLPDTCKKLNIDGQHRKADPLAHACLESKLWVSSMIPSEWIWLAPSKSSASSKDEAHCPKRQSICELEGDSSVDEILNQQFKMYSSLSQTCSDVNMVQSLVPIWEEQQKRTGIHEATMPSDPGKPLPEEVMKLFSVGLDFEKKFIELCSEAGTSLFCTPPGNEWSETDIIGSASPPATLCKNAKLQKEGTDANLEMLTMGEIQSTEMIGSMDIKAADKEAKNLLKWLATSQAAEDINSDDELAYETILTPLLPAATIDKVLEEANMAYESESQKECQDILDSTEDMLELELPKEKPSLSFDNNYSIETSSNIKLPQVDGSNDDEFSGQCGGLAGSSSLPEINSEFKSASEYHVLHTTGTSTVRKDIRNKKWGSLPLSTIDQVNNNGERATLLVTHPVESDIGDYARSDRLNINEVRNSACITRNKDKNGSDSKEVHTSGNCSLRDLMRRKRFYRVEQAEEEPGTTKKLLLDRHEEPNECFWQKQLDLKTMQTDEEEMEDQNANLFHGKLLLSTGIDSRSQAGRSKDGCFEQHEMEGIEANAELRNCTEGGSALMHDGPGLHNPERSPQTDSSASTSVQNSFIIDSVSSKYNFVNQSSPQSLSFVQHDQMTFCENSVKKSDAKDVQVLFSEKVDNQKVGENLLHEIIGSEPTDLKGNHMKLTEITTSKNPPADENLESRTTSNTHLHLVEDSSDEMPGDDLDVFLPISARISKKGMETCNEYVTNKTFTSNGTKVATTHYQNDGSHLYLLTPKMLPPSVDTVHRWLLCNERGHIPDHVHQEPDAENKDKCASETEPPLMPKLHVDADTEKRAPCNGEGQTERVKIHLDDSQDTPQISAPDGKSIFTPLSQTGFRDPASVGCGQQLTLLSIEILAESRGELLPDPQFDGINIIALGFQNDSDSIIEVLVLLHSKFVPCRRNVDGLSGSKVLVFTDEKLLLKEFIKIVSSSDPDILMGWDIQGSSLGFLAERASHLGLGLLNNLSRTPSESLNSSEDMKTSEKEILELDIHDTPSLDCCVPENSVIEDEWGRTHASGVHVGGRIVLNVWRLIRGEVKLNLYSVESVAESVLRRKVPSFHHKVLTKWFSSGPGRARYRCIKYVIERAKLNLEILNQLDMVNRTSELARVFGIEFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVVGSKANTLGVSPFSPEQHVLQELKDQILLTPNGVMFVPCKVRRGILPRLLEEILTTRVMVKQAIKKLAPTEKVLQRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLENAISFVNLHEKWNARVVYGDTDSMFVLLKGRTLKESFQIGSEIASSISAMNPNPVSLKMEKVYHPCFLLTKKRYVGYSYESPHQTEPVFDAKGIETVRRDTCGAVAKIMEQSLRLFFEQQDLLEVKTYLQRQWKRILSEKFCLKDFIFAKEVRLGTYSARMSSLPPAAIVATKAMMVDPRAEPRYAERIPYVVIHGEPGARLVDMVVDPLEVLAIDSPFRINDLYYINKQIIPALQRVFGLVNADLNHWLLEMPRPTREASAKHKLTSNSHRTRIDYYYLSKHCVLCGRLVQASARLCSQCSENEVAAATAVISKTSKLEKEMQHLVAICHHCGGGDRLLESGVKCTSISCLVFFERRKVQKELLAATHIAADTDLYPRCIVEWF* 1919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01286 1918 FunFam DNA polymerase 1626 1794 - -
Phac6g01286 1918 MobiDBLite consensus disorder prediction 971 993 - -
Phac6g01286 1918 FunFam DNA polymerase zeta 1451 1510 - -
Phac6g01286 1918 Pfam C4-type zinc-finger of DNA polymerase delta 1817 1890 IPR025687 -
Phac6g01286 1918 Gene3D DNA Polymerase, chain B, domain 1 30 195 - -
Phac6g01286 1918 FunFam DNA polymerase 30 195 - -
Phac6g01286 1918 ProSitePatterns DNA polymerase family B signature. 1551 1559 IPR017964 GO:0000166|GO:0003676
Phac6g01286 1918 SUPERFAMILY DNA/RNA polymerases 1371 1783 IPR043502 -
Phac6g01286 1918 Gene3D Helix hairpin bin 1450 1510 - -
Phac6g01286 1918 FunFam DNA polymerase 1066 1367 - -
Phac6g01286 1918 CDD POLBc_zeta 1332 1780 - -
Phac6g01286 1918 MobiDBLite consensus disorder prediction 743 770 - -
Phac6g01286 1918 Pfam DNA polymerase family B 1325 1772 IPR006134 GO:0000166|GO:0003677
Phac6g01286 1918 Gene3D - 1626 1791 IPR042087 -
Phac6g01286 1918 Gene3D - 1091 1367 IPR036397 GO:0003676
Phac6g01286 1918 SMART polmehr3 1057 1563 IPR006172 GO:0000166|GO:0003676|GO:0003887
Phac6g01286 1918 Pfam DNA polymerase family B, exonuclease domain 1054 1196 IPR006133 -
Phac6g01286 1918 Pfam DNA polymerase family B, exonuclease domain 55 196 IPR006133 -
Phac6g01286 1918 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 5 1911 IPR030559 GO:0006281|GO:0016035|GO:0019985
Phac6g01286 1918 SUPERFAMILY Ribonuclease H-like 36 1331 IPR012337 -
Phac6g01286 1918 CDD DNA_polB_zeta_exo 1056 1306 - -
Phac6g01286 1918 PRINTS DNA-directed DNA-polymerase family B signature 1493 1505 IPR006172 GO:0000166|GO:0003676|GO:0003887
Phac6g01286 1918 PRINTS DNA-directed DNA-polymerase family B signature 1549 1557 IPR006172 GO:0000166|GO:0003676|GO:0003887
Phac6g01286 1918 PRINTS DNA-directed DNA-polymerase family B signature 1384 1397 IPR006172 GO:0000166|GO:0003676|GO:0003887
Phac6g01286 1918 Gene3D Palm domain of DNA polymerase 1370 1615 IPR023211 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01286 Phac-Chr6 15940007 15958825 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01286 39 194 Core DNA Replication Machinery Family AT5G63960 27.950 8.44e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01286 K02350 - cave:132173096 2134.38