Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01285 ATGAAACTTTACATTGGCTTGTGTTTATTTGTTGAAGGGGATGATCTGGATGTATTTCTTCCGATTTCTGCAAGGATTTCTAAGAAAGGGATGGAAACTTGCAATGAGTATGTTACAAATAAAACCTTTACATCTAATGGGACAAAGGTTGCCACCACTCACTATCAAAATGATGGCTCTCACCTGTACCTATTAACACCTAAAATGTTGCCTCCTTCTGTGGATACTGTGCATAGATGGCTACTTTGTAATGAGAGAGGGCATATTCCTGATCATGTACATCAAGAACCAGATGCAGAGAACAAGGATAAATGTGCTTCTGAGACTGAACCTCCTCTTATGCCTAAGCTGCATGTAGATGCTGATACAGAAAAGAGGGCTCCGTGCAATGGAGAAGGACAAACAGAAAGAGTGAAAATACACCTAGATGACTCACAAGATACTCCTCAGATATCAGCCCCGGATGGAAAATCAATCTTTACCCCTCTAAGTCAAACTGGATTTCGAGACCCTGCAAGTGTTGGCTGTGGACAGCAACTGACATTACTTAGTATAGAGATTCTTGCAGAATCTAGAGGAGAACTTTTACCTGATCCTCAATTTGATGGCATCAACATTATAGCTCTTGGTTTTCAGAACGATAGTGATTCTATTATTGAAGTTCTAGTTCTTCTACACAGTAAATTTGTACCTTGTCGGAGAAATGTCGATGGTCTATCTGGCTCGAAAGTATTGGTCTTCACCGATGAGAAGCTATTGTTAAAAGAATTTATAAAGATTGTGTCTTCATCTGACCCAGATATTTTGATGGGTTGGGATATTCAAGGGAGTTCTCTTGGTTTTCTAGCAGAAAGAGCATCTCATCTTGGTTTGGGATTACTTAATAATCTGTCTCGCACTCCTTCTGAGTCTTTGAATTCTTCTGAAGATATGAAAACTTCTGAAAAAGAAATCTTGGAGCTGGACATTCATGACACGCCTAGTTTAGATTGTTGTGTGCCAGAAAATTCAGTAATTGAGGATGAATGGGGACGGACACATGCTAGTGGAGTTCATGTAGGAGGCAGAATTGTCCTTAATGTATGGCGATTGATCCGTGGAGAAGTTAAGTTGAACTTATATTCTGTTGAATCTGTTGCTGAATCTGTTTTGAGGCGGAAAGTTCCTTCATTTCATCATAAAGTGCTGACAAAATGGTTTTCAAGTGGTCCTGGACGAGCCAGATATCGGTGTATCAAATATGTTATAGAGAGAGCAAAGCTGAACCTAGAGATATTAAACCAACTTGATATGGTGAATCGAACATCAGAACTTGCTCGTGTCTTTGGGATAGAGTTTTTCTCTGTTCTCTCTCGAGGATCACAATACCGTGTTGAATCCATGTTTCTGAGGTTGGCCCATACACAAAACTATCTTGCTATCTCACCTGGAAATCAACAGGTTGCTTCTCAACCTGCTATGGAGTGCCTTCCTCTAGTAATGGAACCAGAATCTGGATTTTATTCAGATCCTGTTGTTGTGCTTGACTTCCAGTCTTTATATCCATCCATGATAATTGCATACAATCTTTGCTTCTGCACTTGTCTGGGTAAAGTTGTGGGATCAAAGGCCAATACACTTGGGGTTAGTCCATTCTCACCAGAGCAACATGTCCTGCAGGAGTTAAAGGATCAAATCTTGCTCACTCCAAATGGTGTTATGTTTGTACCTTGCAAGGTTCGAAGAGGTATACTGCCCCGCTTATTGGAAGAAATCTTAACTACTAGAGTTATGGTAAAACAAGCAATAAAAAAATTGGCTCCTACAGAGAAAGTTCTTCAACGGATATTTAATGCGAGACAGCTTGCTTTGAAGCTCATAGCGAATGTAACATATGGCTACACTGCTGCTGGATTTAGTGGTCGCATGCCCTGTGCAGAACTTGCAGACAGTATTGTCCAGTGTGGTCGTAGTACACTGGAAAATGCTATATCATTTGTAAATCTACATGAAAAGTGGAATGCTAGAGTTGTCTATGGGGATACTGATAGTATGTTTGTTCTCCTTAAAGGACGCACTTTGAAAGAGTCTTTCCAAATTGGAAGTGAGATTGCCTCTTCCATCTCTGCTATGAATCCTAACCCTGTCTCCCTGAAGATGGAGAAAGTTTATCACCCATGTTTCCTTCTTACTAAGAAACGATATGTTGGCTACAGTTATGAAAGTCCTCATCAAACTGAACCAGTTTTTGATGCTAAAGGTATTGAGACAGTTCGCAGGGACACATGTGGTGCAGTTGCAAAGATAATGGAGCAGTCTTTGAGGCTCTTTTTTGAGCAACAGGATTTATTGGAGGTGAAGACTTATTTGCAACGTCAGTGGAAGAGGATTCTTTCGGAGAAATTCTGCCTTAAAGATTTTATCTTTGCAAAGGAGGTTCGCTTGGGTACCTACAGTGCAAGAATGTCATCACTTCCTCCTGCTGCAATTGTGGCCACTAAGGCAATGATGGTTGACCCTAGGGCAGAACCACGTTATGCTGAGAGAATACCCTATGTTGTAATCCATGGAGAGCCTGGAGCCCGGTTGGTTGATATGGTTGTGGATCCATTGGAAGTTTTGGCAATTGATTCCCCGTTTAGAATAAATGATTTATATTATATTAATAAACAAATAATACCAGCTTTACAGCGGGTATTTGGACTTGTTAATGCTGACCTCAACCATTGGCTTTTAGAGATGCCTCGTCCCACAAGGGAAGCTTCTGCAAAGCATAAATTAACTTCAAATTCCCATCGAACCCGAATTGATTATTACTATCTTTCAAAACATTGTGTATTATGTGGTAGGTTGGTCCAGGCATCAGCCCGTTTATGCAGTCAATGTTCTGAAAATGAAGTAGCTGCTGCAACAGCAGTAATTAGTAAGACTTCGAAGTTAGAGAAAGAGATGCAACATCTTGTTGCTATATGTCACCATTGTGGAGGCGGGGATAGGCTTCTTGAAAGTGGTGTGAAATGCACGTCCATTTCATGCTTGGTGTTCTTTGAGAGGCGGAAGGTTCAGAAAGAACTGCTAGCTGCCACCCATATTGCTGCAGATACAGACTTGTACCCGAGATGCATAGTGGAGTGGTTCTGA 3120 0.4093 MKLYIGLCLFVEGDDLDVFLPISARISKKGMETCNEYVTNKTFTSNGTKVATTHYQNDGSHLYLLTPKMLPPSVDTVHRWLLCNERGHIPDHVHQEPDAENKDKCASETEPPLMPKLHVDADTEKRAPCNGEGQTERVKIHLDDSQDTPQISAPDGKSIFTPLSQTGFRDPASVGCGQQLTLLSIEILAESRGELLPDPQFDGINIIALGFQNDSDSIIEVLVLLHSKFVPCRRNVDGLSGSKVLVFTDEKLLLKEFIKIVSSSDPDILMGWDIQGSSLGFLAERASHLGLGLLNNLSRTPSESLNSSEDMKTSEKEILELDIHDTPSLDCCVPENSVIEDEWGRTHASGVHVGGRIVLNVWRLIRGEVKLNLYSVESVAESVLRRKVPSFHHKVLTKWFSSGPGRARYRCIKYVIERAKLNLEILNQLDMVNRTSELARVFGIEFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVVGSKANTLGVSPFSPEQHVLQELKDQILLTPNGVMFVPCKVRRGILPRLLEEILTTRVMVKQAIKKLAPTEKVLQRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLENAISFVNLHEKWNARVVYGDTDSMFVLLKGRTLKESFQIGSEIASSISAMNPNPVSLKMEKVYHPCFLLTKKRYVGYSYESPHQTEPVFDAKGIETVRRDTCGAVAKIMEQSLRLFFEQQDLLEVKTYLQRQWKRILSEKFCLKDFIFAKEVRLGTYSARMSSLPPAAIVATKAMMVDPRAEPRYAERIPYVVIHGEPGARLVDMVVDPLEVLAIDSPFRINDLYYINKQIIPALQRVFGLVNADLNHWLLEMPRPTREASAKHKLTSNSHRTRIDYYYLSKHCVLCGRLVQASARLCSQCSENEVAAATAVISKTSKLEKEMQHLVAICHHCGGGDRLLESGVKCTSISCLVFFERRKVQKELLAATHIAADTDLYPRCIVEWF* 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01285 1039 CDD DNA_polB_zeta_exo 177 427 - -
Phac6g01285 1039 CDD POLBc_zeta 453 901 - -
Phac6g01285 1039 SUPERFAMILY Ribonuclease H-like 178 468 IPR012337 -
Phac6g01285 1039 ProSitePatterns DNA polymerase family B signature. 672 680 IPR017964 GO:0000166|GO:0003676
Phac6g01285 1039 Gene3D - 747 912 IPR042087 -
Phac6g01285 1039 Pfam DNA polymerase family B 446 893 IPR006134 GO:0000166|GO:0003677
Phac6g01285 1039 Pfam DNA polymerase family B, exonuclease domain 175 317 IPR006133 -
Phac6g01285 1039 FunFam DNA polymerase 747 915 - -
Phac6g01285 1039 SMART polmehr3 178 684 IPR006172 GO:0000166|GO:0003676|GO:0003887
Phac6g01285 1039 Gene3D Helix hairpin bin 571 631 - -
Phac6g01285 1039 Gene3D - 212 488 IPR036397 GO:0003676
Phac6g01285 1039 Gene3D Palm domain of DNA polymerase 491 736 IPR023211 -
Phac6g01285 1039 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 35 1032 IPR030559 GO:0006281|GO:0016035|GO:0019985
Phac6g01285 1039 Pfam C4-type zinc-finger of DNA polymerase delta 938 1011 IPR025687 -
Phac6g01285 1039 MobiDBLite consensus disorder prediction 92 114 - -
Phac6g01285 1039 FunFam DNA polymerase zeta 572 631 - -
Phac6g01285 1039 SUPERFAMILY DNA/RNA polymerases 492 904 IPR043502 -
Phac6g01285 1039 FunFam DNA polymerase 187 488 - -
Phac6g01285 1039 PRINTS DNA-directed DNA-polymerase family B signature 614 626 IPR006172 GO:0000166|GO:0003676|GO:0003887
Phac6g01285 1039 PRINTS DNA-directed DNA-polymerase family B signature 505 518 IPR006172 GO:0000166|GO:0003676|GO:0003887
Phac6g01285 1039 PRINTS DNA-directed DNA-polymerase family B signature 670 678 IPR006172 GO:0000166|GO:0003676|GO:0003887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01285 Phac-Chr6 15940007 15958825 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01285 216 1021 Core DNA Replication Machinery Family AT5G63960 29.594 6.20e-92 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01285 K02350 - gmx:100777934 1855.88