Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01277 ATGTCAAACTCAAACATCACAAGTTGTGATAGTTGGAGCTTCTCCACAGAGAACACTGGAGAAGATGCAGGAGCAGTTAAACAGAAATTAGAGATGCTTGGCCAACTCCATAGTCCAAATTCAAACACTTCAACCACAACAAATAATAGCAATGGCTCAAACACAACTTCACAACCACCTCACAAGAAGAAAAGAAACCTACCAGGAAATCCAGACCCAAATGCCGAAGTGGTAGCTCTATCGCCAAACACACTGGTAGCGACAAACAGGTTCGTGTGTGAAATATGCAACAAAGGGTTTCAAAGGGATCAGAACCTTCAATTGCACCGTCGAGGGCATAACCTACCGTGGAAGCTGAAACTGAGAACCACGACGGAAGTGAAAAAGCGCGTTTACGTTTGTCCCGAACCCTCCTGCGTCCACCACAACCCAGCTCGAGCACTGGGCGATCTCACGGGCATTAAAAAGCACTTTAGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGAAAAGTGTTCAAAGAAATACGCTGTTCATTCTGACTGGAAAGCGCATTCCAAAATATGTGGAACCAAAGAATACAAATGTGACTGTGGCACCATCTTTTCCAGAAGAGACAGCTTCATCACACACAGAGCTTTCTGCGATGCACTGAGTGATGAGAACAACAAATTCAACGAAGCAAGTATTATGCATGGTTCAAACCTGCAACCACCAATAATCCCAAACCTAGTAGCATCACTACCAAGCAATACCAATAATCACAAGCAACCATTATCACTCCCTCACGACCTCATTGTAACAATTCCAGCAAAACCCTTTAACAACAACATCTCAGCATTCACAAGAACCCTTTCATCCACCTCTTCTCCCTCTCAACTCTGCTCAAACTCACCAAACATCAACATGTTTGAGGAAAATGCTCAAACTCACATGTCCGCCACAGCACTGCTTCAAAAAGCTGCACAAATGGGCGCAACAGTGAATAGTAGCAACAACAGCATGATGACAGAAAAGGGCTTTGCTACAAGCATGGCACCACCATCATATGGGGTCATGAACCACCACCACATTCAGAGTCAACAAGACCTCTCTCACTATAATAACTTCCATGCAAATGGGACGATGATGGATGGTGGTGGCAATAGCATGGGAGGAATGAGTGGTTTGGATATGTTTAATGCTATATTGGATCAAAGTAAGGCCTTGTCGAAGATCATAGAGCAGAACAACCGAAGCAGTTACAGTGATGTTTTGCATGCAATGAACAATGGTAGGTCAACAACTTCCATTGATGTTGGTGGAGCTAAAGGGGGTGAGAATGTGATGACTTTGGACTTGTTGGGGATAGGAGGAGGTGGTGGTGATGGAAATTTCTTTGGTGGTGAACAGTCAGAACTAAAGATGGAATATGGAGAAATTAGTCAAATAAGAATTCAAGGCTTGAACCAGTTTCAGCAACAAACAGCAGCATATGAAAATTAA 1485 0.4364 MSNSNITSCDSWSFSTENTGEDAGAVKQKLEMLGQLHSPNSNTSTTTNNSNGSNTTSQPPHKKKRNLPGNPDPNAEVVALSPNTLVATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKLRTTTEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVHSDWKAHSKICGTKEYKCDCGTIFSRRDSFITHRAFCDALSDENNKFNEASIMHGSNLQPPIIPNLVASLPSNTNNHKQPLSLPHDLIVTIPAKPFNNNISAFTRTLSSTSSPSQLCSNSPNINMFEENAQTHMSATALLQKAAQMGATVNSSNNSMMTEKGFATSMAPPSYGVMNHHHIQSQQDLSHYNNFHANGTMMDGGGNSMGGMSGLDMFNAILDQSKALSKIIEQNNRSSYSDVLHAMNNGRSTTSIDVGGAKGGENVMTLDLLGIGGGGGDGNFFGGEQSELKMEYGEISQIRIQGLNQFQQQTAAYEN* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01277 494 MobiDBLite consensus disorder prediction 34 63 - -
Phac6g01277 494 MobiDBLite consensus disorder prediction 1 22 - -
Phac6g01277 494 SUPERFAMILY beta-beta-alpha zinc fingers 90 187 IPR036236 -
Phac6g01277 494 Gene3D Classic Zinc Finger 87 114 - -
Phac6g01277 494 MobiDBLite consensus disorder prediction 1 76 - -
Phac6g01277 494 SMART c2h2final6 167 187 IPR013087 -
Phac6g01277 494 SMART c2h2final6 132 162 IPR013087 -
Phac6g01277 494 SMART c2h2final6 91 113 IPR013087 -
Phac6g01277 494 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 43 467 IPR031140 -
Phac6g01277 494 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 113 IPR013087 -
Phac6g01277 494 Gene3D Classic Zinc Finger 146 224 - -
Phac6g01277 494 FunFam protein indeterminate-domain 5, chloroplastic-like 145 224 - -
Phac6g01277 494 FunFam protein indeterminate-domain 12-like 70 138 - -
Phac6g01277 494 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Phac6g01277 494 Pfam Zinc finger, C2H2 type 91 113 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01277 Phac-Chr6 15883840 15887489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01277 42 224 IDZ Gene Family AT5G66730 77.660 1.02e-107 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac6g01277 zf-C2H2 0.005 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01277 - - pvu:PHAVU_006G090800g 917.916