Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01211 ATGATACCTCTCAGTTTACTCAGCACTCATGGTGTAACAGATAATTCAGTGCCATGTTCTCCATACATTGATCCAGAGGTTCATAGTAATATTGAGTCAACTCGCATTGATAAAGAGCACAAGAAGAATTTGTCCTATAGGTATTTGACGCATTCTACTTCCGTACATTTAGGAAAAAGTAATGTATTAAAGGATGTAATGATATGGGGTGGAGGGATTGGATGTCTTGTAGGGATTGTGAACGAAAGGTTTGTTCAAGGCGGGGTCTATTCTTTGGTGCCGAAGTTACTAGAATCCACTGCAATGTTAGATGTACAGAACATAGCTTTGGGAGGAAAACATGCTGCCTTAGTTACAAAACAAGGGGAAGTTTTTTGTTGGGGTCAAGGAAAGTGGGGAAGACTCGGGCAGAAAATTGATATGGACATTAGCTCCCCAAAAATAGTTGATTCTCTTAATGGTCTTCATGTAAAGCATGTTTCTTGTGGTGAGTATCATACATGTGCTTTGACAGATTCTGGTGAAGTATATACTTGGGGAAATGATGTCTGCTGTACAGATTTATTTAATGAAGGGAGAACAAGAAGTCAGTGGATACCGCAAAAACTTGGTGGATCCTTAGATGGTATTAGTATCTCAAGTATTGCTTGTGGGGAATGGCATACTGCGATTGTCTCTAGTTGTGGGAGGTTATTTACTTACGGAGATGGTACATTTGGGGTTCTTGGCCATGGCGATGTTCGGAGCTGTTCAAGTCCAAAAGAAGTTGAGTCTCTTAGTGGACTAAGGGTGAGATCTGTTGCATGTGGATCGTGGCATACATCTGCTATTGTTGAAGTCATGTTTGATCGTTTTAGGTACAATAGTGCTAGTGGTAAGTTGTTTACATGGGGTGATGGAGATGAGGGGAGGCTTGGTCATTCCGATAATGGAAGCAAGCTTGTGCCAACATGTGTTACACAACTTGTAGACTATGATTTTGTTCAAGTGTCATGTGGAAGAATGTTGACTGTAGCACTCACTAACATGGGCAAGGTTTTTGCAATAGGTAGTGCCAAATATGGACAGTTAGGAAATCCACATGCCAAGGATAAAGCAGTCATGGTTGAAGGACAACTCAAACAAGAGTTTGTTAAAGTTATATCAACTGGTTCATATCATGTTGCTGTTTTGACTTCTGCAGGGAGTGTCTATACATGGGGCAGGGGTGAAAGTGGCCAACTGGGGCTAGGTGATACTGAAGATAGATATACACCTTGTTTTGTTGAGGCTCTGAGAGATAGACAGGTAAATACTATCACTTGTGGTCCAAGCTTCACAGCTGCAATCTGTTTACACAAACCTATTTCTATTAGTGACCAATCAACTTGTAGTGGTTGTAGGTTGCCATTTGGGTTCACAAGGAAGAAGCATAACTGCTATAACTGTGGTCTTTTGTTCTGCCGTGCTTGTAGTAGTAAGAAGATTATAAATGCACCTCTAGCCCCCAGTAAGAGCAAGGCTTTTCGGGTTTGTGATCAGTGTTTTGATAAACGACAGGGAGGTACACATTCAATAATGGCATCCAAATCCCGAAATTACAACAGTCAACAGTTGTTGAAGCAACAACAAAAAATTGCTGATATGACTGAGGACAGGGGAGAGACAACCGTGACACAAGGGCCTCTCTTATCACTTGGTCAATCATGTTACAGGAAAAGTATGCCAAGTGGACGTAAGGATTGGAAAAACCACCCAGAAAGCCAACAGGATGTAGAAGATATTTCGTCTAGGCTAGGTGGAATGCCACAGTGGGGGCAAGTTCCATGTCCTGCCATATTTAAAATTAATTGTACAGAAAATCCAGTTCTTCATGTTTCTTCATCCAAAAGTAAATTAGCCACAGTTTCCCCTTTTAATATGGAATCTTCAACATATAACTGCTCTAAAGTAGAGACAGATACAACTAAGTCTGACAAGCTGCTCCTTGAAGAAGTTCATAGGCTGAGAGCCGAGGCTAAGAGACTTGAAGAGCAATGTGAGCTTAAAAATAATAAAATACAAGAGTGTCAACAAAAAATTGAGGAGAGTTGGTTTGTGGCAAGGGAGGAAGCTGCTAAGTGCAAGGCAGCGAAAGAGGTCATAAAAGCTTTAGCATTAAGGCTTCATACAATATCAGGAAAAGATAACGCTGGACAAGAAGCAAAAGTTGGACAACATGAATTTGTGCCGAATGTGGCAACCATAGTTACAGATATGAAGAGTCCAAGAGATGGCAATGTGGACAGTCTATCCAATTCTCCTATAGTATTCTCTGAGACATTAAAATCCAAATTTGGGAGAAGTATGTTTCCCAAAAACGAAAATTCTAACTTTAACAGAGGAGAATCTCAACAAGATAATATCAATGGCTTGAAGGCTGACTGGGTAGAACAATATGAGCCAGGTGTTTACATCACATTTACAACCTTGCCATGTGGGAAAAAAGGCCTCAAGCGAGTGAGATTTAGTCGCAAACGATTCTTAGAGAAGGAAGCCGAAAAATGGTGGGAAGAGAATCAGAGCACGGTGTATCAGAAGTATGGGATTGAAGGATATATAAACACGAGCCAAAGTCAGGTGAAAGGCTAA 2610 0.4084 MIPLSLLSTHGVTDNSVPCSPYIDPEVHSNIESTRIDKEHKKNLSYRYLTHSTSVHLGKSNVLKDVMIWGGGIGCLVGIVNERFVQGGVYSLVPKLLESTAMLDVQNIALGGKHAALVTKQGEVFCWGQGKWGRLGQKIDMDISSPKIVDSLNGLHVKHVSCGEYHTCALTDSGEVYTWGNDVCCTDLFNEGRTRSQWIPQKLGGSLDGISISSIACGEWHTAIVSSCGRLFTYGDGTFGVLGHGDVRSCSSPKEVESLSGLRVRSVACGSWHTSAIVEVMFDRFRYNSASGKLFTWGDGDEGRLGHSDNGSKLVPTCVTQLVDYDFVQVSCGRMLTVALTNMGKVFAIGSAKYGQLGNPHAKDKAVMVEGQLKQEFVKVISTGSYHVAVLTSAGSVYTWGRGESGQLGLGDTEDRYTPCFVEALRDRQVNTITCGPSFTAAICLHKPISISDQSTCSGCRLPFGFTRKKHNCYNCGLLFCRACSSKKIINAPLAPSKSKAFRVCDQCFDKRQGGTHSIMASKSRNYNSQQLLKQQQKIADMTEDRGETTVTQGPLLSLGQSCYRKSMPSGRKDWKNHPESQQDVEDISSRLGGMPQWGQVPCPAIFKINCTENPVLHVSSSKSKLATVSPFNMESSTYNCSKVETDTTKSDKLLLEEVHRLRAEAKRLEEQCELKNNKIQECQQKIEESWFVAREEAAKCKAAKEVIKALALRLHTISGKDNAGQEAKVGQHEFVPNVATIVTDMKSPRDGNVDSLSNSPIVFSETLKSKFGRSMFPKNENSNFNRGESQQDNINGLKADWVEQYEPGVYITFTTLPCGKKGLKRVRFSRKRFLEKEAEKWWEENQSTVYQKYGIEGYINTSQSQVKG* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01211 869 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 122 173 IPR000408 -
Phac6g01211 869 Pfam Regulator of chromosome condensation (RCC1) repeat 229 277 IPR000408 -
Phac6g01211 869 Pfam Regulator of chromosome condensation (RCC1) repeat 173 224 IPR000408 -
Phac6g01211 869 Pfam Regulator of chromosome condensation (RCC1) repeat 122 170 IPR000408 -
Phac6g01211 869 Pfam Regulator of chromosome condensation (RCC1) repeat 395 443 IPR000408 -
Phac6g01211 869 Pfam Regulator of chromosome condensation (RCC1) repeat 291 340 IPR000408 -
Phac6g01211 869 SUPERFAMILY RCC1/BLIP-II 64 447 IPR009091 -
Phac6g01211 869 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 453 523 IPR013083 -
Phac6g01211 869 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 58 716 - -
Phac6g01211 869 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 395 446 IPR000408 -
Phac6g01211 869 Coils Coil 652 686 - -
Phac6g01211 869 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 229 280 IPR000408 -
Phac6g01211 869 SMART fyve_4 445 514 IPR000306 GO:0046872
Phac6g01211 869 PRINTS Chromosome condensation regulator RCC1 signature 215 231 IPR000408 -
Phac6g01211 869 PRINTS Chromosome condensation regulator RCC1 signature 231 245 IPR000408 -
Phac6g01211 869 PRINTS Chromosome condensation regulator RCC1 signature 333 351 IPR000408 -
Phac6g01211 869 PRINTS Chromosome condensation regulator RCC1 signature 390 411 IPR000408 -
Phac6g01211 869 PRINTS Chromosome condensation regulator RCC1 signature 124 140 IPR000408 -
Phac6g01211 869 PRINTS Chromosome condensation regulator RCC1 signature 174 190 IPR000408 -
Phac6g01211 869 PRINTS Chromosome condensation regulator RCC1 signature 105 118 IPR000408 -
Phac6g01211 869 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 344 394 IPR000408 -
Phac6g01211 869 Gene3D - 284 452 IPR009091 -
Phac6g01211 869 Gene3D - 38 186 IPR009091 -
Phac6g01211 869 Gene3D - 187 281 IPR009091 -
Phac6g01211 869 Pfam FYVE zinc finger 453 511 IPR000306 GO:0046872
Phac6g01211 869 SUPERFAMILY FYVE/PHD zinc finger 452 525 IPR011011 -
Phac6g01211 869 Pfam Transcription factor regulating root and shoot growth via Pin3 800 854 IPR013591 -
Phac6g01211 869 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 292 343 IPR000408 -
Phac6g01211 869 ProSiteProfiles BRX domain profile. 800 855 IPR013591 -
Phac6g01211 869 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 451 513 IPR017455 -
Phac6g01211 869 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 174 228 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01211 Phac-Chr6 15575857 15585739 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01211 801 859 Major Intrinsic Protein MIP AT1G31880 44.068 6.02e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01211 - - gmx:100797223 1587.39