Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01209 ATGTTTTGCATCACTTCGCCATCGCTTGTATCAGCAACAACAACAACGAAACGCAAATCAATGTCAAAACTAACCCTTCTCTTTTTTCTTCAATTCACATTCTTCAATTCTTCAACAGTCACAAGTTTATACTCTCCTTCACCTCCCGCCGCGCCATTTTCCCAAACTATCCCTGATCCCGACTCCTCTCCACGCGCCGAGTGGCTCTTCGCCCACGCCACGCACTACGCCGCCGCCGAAGCGCTTGGCGGCGCTTGCGGCTACGGCGACATTCCCAACGGCATGGCCACCGCCGCACTCAGCGAAGCCCTCTTCGACCGCGGCCAGATCTGCGGCGCCTGCTTCGAGCTCCGCTGCCTCGAGGAGGACTCCGACTTCGACCGCCGCTGGTGCATCTCCGGCGCGTCGGTTGTCGTCACCGCCACCAATTTCTGCGCACCGAACTACGGATCCGACGCCGAGAGCCTCAGCGGACACTGTAACCCTCCGAAGCAGCATTTCGTTCTCCCCATTGAAGTTTTCGAGAAAATCGCAATCTGGAAAAGTGGCAGCGGCAACATGCCAGTGCAGTATCGCAGGATAGAGTGCAGAAGAGAAGGGGGAATCCGGTTTACAATAAGTGGTTCTGGAATCTTCATTTCGGTACTGATTAGTAATGTTGGTGGAATGGGGAACATTGTGGGTGTGAAGGTTAAGGGTTCAAAAACTGGTTGGCTTTCTATGGGTAGAAACTGGGGTCAGAATTGGCATGTTAATGCTTTACTACAGAATCAACCTCTTTCTTTTGAGCTCACTGCTAGTGATGGAAGAACTGTTACGTCTTACAATGTTGCTCCCAAAGGTTGGACCTTCGGACAATCTTTTCAGGGAAAACAATTTCATGAGACATCAATTTAA 897 0.5139 MFCITSPSLVSATTTTKRKSMSKLTLLFFLQFTFFNSSTVTSLYSPSPPAAPFSQTIPDPDSSPRAEWLFAHATHYAAAEALGGACGYGDIPNGMATAALSEALFDRGQICGACFELRCLEEDSDFDRRWCISGASVVVTATNFCAPNYGSDAESLSGHCNPPKQHFVLPIEVFEKIAIWKSGSGNMPVQYRRIECRREGGIRFTISGSGIFISVLISNVGGMGNIVGVKVKGSKTGWLSMGRNWGQNWHVNALLQNQPLSFELTASDGRTVTSYNVAPKGWTFGQSFQGKQFHETSI* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01209 298 SUPERFAMILY Barwin-like endoglucanases 67 219 IPR036908 -
Phac6g01209 298 Pfam Lytic transglycolase 97 191 IPR009009 -
Phac6g01209 298 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 211 290 IPR007117 -
Phac6g01209 298 Gene3D - 54 197 IPR036908 -
Phac6g01209 298 Pfam Expansin C-terminal domain 202 279 IPR007117 -
Phac6g01209 298 CDD DPBB_EXPA_N 67 196 - -
Phac6g01209 298 Gene3D - 201 293 IPR036749 -
Phac6g01209 298 SUPERFAMILY PHL pollen allergen 198 289 IPR036749 -
Phac6g01209 298 PRINTS Expansin signature 247 268 IPR002963 GO:0009664
Phac6g01209 298 PRINTS Expansin signature 200 212 IPR002963 GO:0009664
Phac6g01209 298 PRINTS Expansin signature 276 292 IPR002963 GO:0009664
Phac6g01209 298 PRINTS Expansin signature 212 233 IPR002963 GO:0009664
Phac6g01209 298 PRINTS Expansin signature 92 106 IPR002963 GO:0009664
Phac6g01209 298 PRINTS Expansin signature 157 174 IPR002963 GO:0009664
Phac6g01209 298 PRINTS Expansin/Lol pI family signature 276 290 IPR007118 GO:0005576
Phac6g01209 298 PRINTS Expansin/Lol pI family signature 184 200 IPR007118 GO:0005576
Phac6g01209 298 PRINTS Expansin/Lol pI family signature 67 82 IPR007118 GO:0005576
Phac6g01209 298 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Phac6g01209 298 SMART dpbb_1 97 191 IPR007112 -
Phac6g01209 298 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 83 201 IPR007112 -
Phac6g01209 298 PANTHER EXPANSIN-A15 36 293 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01209 Phac-Chr6 15559817 15561137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01209 67 294 Expansin Gene Family AT3G03220 67.521 3.52e-114 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01209 - - gmx:100790211 417.542