LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac6g01206	ATGGGTTCTTGGTCTAGACTATCTGTTTTGACTATTCCGTGCTCTACAATCAATGCTGAATCTGCTATGGACTCCAAATTAGGCACTGTTTTTTATAAAATTTACAGAAATACAAATAAAAGAAATCTCAGTCTCTCTTTTTCTTGGGGTAATCGTAAACTTAGGAGTATTGGTGTGATTAAATCAAACCAAGATGTATCTAATTTTCAAACCGAACAAGAAGTAGGAACTTGGGAAGAACCGGATACTGGCAGTGACAGTGAGTCTGATGGCGAGGAAGTTGAAGACCACTTTGTATTTGCAAGTGATGGAATGAAGACGTCAGTTGTTGCTGATGTTAATATAACTTCAGGGGACAACTACGAGGAACTTATTAAGAAAGAGGTTGAACAGCTTTTGGAACCAGAAGAAAGAGCAATATTGCAACAGAATGTTACTCCTAACTTGGAAAAAATATCAACTGAAAAATGGAGCCCGCTGCACACTCTTGTTCTATCAATGCAGATGAGTTGCGTGGATAAGCTTCTTGATAATGGCGTTGACATTGATTTACCTGATAAGGAAGGTCTTACTGCACTTCATAAGGCAATTATAGGTAAAAAAGATACTTTGATTAGCCACCTTTTACGGAGACGTGCAAGTCCACATGTTAAGGATAAGGATGGAGCCACTCCACTTCATTATGCAGCTCAAGTTGGTGCCAAAATGACTGTGAAATTATTGATCAAGTACAAGGCTGATGTCAATGTTGAAGATAACGAAGGTTGGACCCCCTTGCACGTTGCCATTCAAAGCAGAAATAGAGATTTAGCAAAAATTTTGTTAGTCAATGGTGCTGATAAGACAAGGAAAAATAAGGACGGAAAAACAGCCCTGGATCTGAGCTTTTGTTATGGGAAAGATTTTAAGTCTTATGAACTTGCCAAACTACTGAAGACGGTTCCAGCTGATAGCTGTCTATGA	963	0.3873	MGSWSRLSVLTIPCSTINAESAMDSKLGTVFYKIYRNTNKRNLSLSFSWGNRKLRSIGVIKSNQDVSNFQTEQEVGTWEEPDTGSDSESDGEEVEDHFVFASDGMKTSVVADVNITSGDNYEELIKKEVEQLLEPEERAILQQNVTPNLEKISTEKWSPLHTLVLSMQMSCVDKLLDNGVDIDLPDKEGLTALHKAIIGKKDTLISHLLRRRASPHVKDKDGATPLHYAAQVGAKMTVKLLIKYKADVNVEDNEGWTPLHVAIQSRNRDLAKILLVNGADKTRKNKDGKTALDLSFCYGKDFKSYELAKLLKTVPADSCL*	321

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac6g01206	320	SMART	ANK_2a	287	320	IPR002110	GO:0005515
	Phac6g01206	320	SMART	ANK_2a	155	184	IPR002110	GO:0005515
	Phac6g01206	320	SMART	ANK_2a	254	283	IPR002110	GO:0005515
	Phac6g01206	320	SMART	ANK_2a	221	250	IPR002110	GO:0005515
	Phac6g01206	320	SMART	ANK_2a	188	217	IPR002110	GO:0005515
	Phac6g01206	320	ProSiteProfiles	Ankyrin repeat profile.	221	253	IPR002110	GO:0005515
	Phac6g01206	320	ProSiteProfiles	Ankyrin repeat profile.	254	286	IPR002110	GO:0005515
	Phac6g01206	320	ProSiteProfiles	Ankyrin repeat region circular profile.	221	253	-	-
	Phac6g01206	320	Pfam	Ankyrin repeats (3 copies)	204	285	IPR002110	GO:0005515
	Phac6g01206	320	Gene3D	-	222	301	IPR036770	-
	Phac6g01206	320	Gene3D	-	119	221	IPR036770	-
	Phac6g01206	320	ProSiteProfiles	Ankyrin repeat profile.	155	187	IPR002110	GO:0005515
	Phac6g01206	320	PANTHER	ANKYRIN REPEAT FAMILY PROTEIN	127	312	-	-
	Phac6g01206	320	ProSiteProfiles	Ankyrin repeat profile.	188	220	IPR002110	GO:0005515
	Phac6g01206	320	MobiDBLite	consensus disorder prediction	70	93	-	-
	Phac6g01206	320	MobiDBLite	consensus disorder prediction	79	93	-	-
	Phac6g01206	320	SUPERFAMILY	Ankyrin repeat	147	311	IPR036770	-
	Phac6g01206	320	Pfam	Ankyrin repeats (many copies)	157	198	IPR002110	GO:0005515
	Phac6g01206	320	ProSiteProfiles	Ankyrin repeat region circular profile.	254	280	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac6g01206	Phac-Chr6	15545573	15551825	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac6g01206	174	295	Ion Channels	AT2G25600	29.412	8.18e-08	52.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac6g01206	-		-	gmx:100808064	507.679