LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac6g01201	ATGGGTTCTTGGTCTAGACTATCTGTTTTGACTATTCCGTGCTCTACAATCAATGCTGAATCTGCTATGGACTCCAAATTAGGCACTGTTTTTTATAAAATTTACAGAAATACAAATAAAAGAAATCTCAGTCTCTCTTTTTCTTGGGGTAATCGTAAACTTAGGAGTATTGGTGTGATTAAATCAAACCAAGATGTATCTAATTTTCAAACCGAACAAGAAGTAGGAACTTGGGAAGAACCGGATACTGGCAGTGACAGTGAGTCTGATGGCGAGGAAGTTGAAGACCACTTTGTATTTGCAAGTGATGGAATGAAGACGTCAGTTGTTGCTGATGTTAATATAACTTCAGGGGACAACTACGAGGAACTTATTAAGAAAGAGGTTGAACAGCTTTTGGAACCAGAAGAAAGAGCAATATTGCAACAGAATGTTACTCCTAACTTGGAAAAAATATCAACTGAAAAATGGAGCCCGCTGCACACTCTTGTTCTATCAATGCAGATGAGTTGCGTGGATAAGCTTCTTGATAATGGCGTTGACATTGATTTACCTGATAAGGAAGGTCTTACTGCACTTCATAAGGCAATTATAGGTAAAAAAGATACTTTGATTAGCCACCTTTTACGGAGACGTGCAAGTCCACATGTTAAGGATAAGGATGGAGCCACTCCACTTCATTATGCAGCTCAAGTTGGTGCCAAAATGACTGTGAAATTATTGATCAAGTACAAGGCTGATGTCAATGTTGAAGATAACGTGATCATTTCTTTAACGCAGGAAGGTTGGACCCCCTTGCACGTTGCCATTCAAAGCAGAAATAGAGATTTAGCAAAAATTTTGTTAGTCAATGGTGCTGATAAGACAAGGAAAAATAAGGACGGAAAAACAGCCCTGGATCTGAGCTTTTGTTATGGGAAAGATTTTAAGTCTTATGAACTTGCCAAACTACTGAAGACGGTTCCAGCTGATAGCTGTCTATGA	984	0.3872	MGSWSRLSVLTIPCSTINAESAMDSKLGTVFYKIYRNTNKRNLSLSFSWGNRKLRSIGVIKSNQDVSNFQTEQEVGTWEEPDTGSDSESDGEEVEDHFVFASDGMKTSVVADVNITSGDNYEELIKKEVEQLLEPEERAILQQNVTPNLEKISTEKWSPLHTLVLSMQMSCVDKLLDNGVDIDLPDKEGLTALHKAIIGKKDTLISHLLRRRASPHVKDKDGATPLHYAAQVGAKMTVKLLIKYKADVNVEDNVIISLTQEGWTPLHVAIQSRNRDLAKILLVNGADKTRKNKDGKTALDLSFCYGKDFKSYELAKLLKTVPADSCL*	328

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac6g01201	327	ProSiteProfiles	Ankyrin repeat profile.	221	253	IPR002110	GO:0005515
	Phac6g01201	327	ProSiteProfiles	Ankyrin repeat region circular profile.	221	253	-	-
	Phac6g01201	327	SUPERFAMILY	Ankyrin repeat	147	318	IPR036770	-
	Phac6g01201	327	ProSiteProfiles	Ankyrin repeat profile.	261	293	IPR002110	GO:0005515
	Phac6g01201	327	ProSiteProfiles	Ankyrin repeat profile.	155	187	IPR002110	GO:0005515
	Phac6g01201	327	PANTHER	ANKYRIN REPEAT FAMILY PROTEIN	127	319	-	-
	Phac6g01201	327	ProSiteProfiles	Ankyrin repeat profile.	188	220	IPR002110	GO:0005515
	Phac6g01201	327	MobiDBLite	consensus disorder prediction	70	93	-	-
	Phac6g01201	327	Pfam	Ankyrin repeats (many copies)	260	301	IPR002110	GO:0005515
	Phac6g01201	327	Pfam	Ankyrin repeats (3 copies)	169	252	IPR002110	GO:0005515
	Phac6g01201	327	Gene3D	-	120	222	IPR036770	-
	Phac6g01201	327	ProSiteProfiles	Ankyrin repeat region circular profile.	261	287	-	-
	Phac6g01201	327	MobiDBLite	consensus disorder prediction	79	93	-	-
	Phac6g01201	327	Gene3D	-	223	324	IPR036770	-
	Phac6g01201	327	SMART	ANK_2a	261	290	IPR002110	GO:0005515
	Phac6g01201	327	SMART	ANK_2a	294	327	IPR002110	GO:0005515
	Phac6g01201	327	SMART	ANK_2a	155	184	IPR002110	GO:0005515
	Phac6g01201	327	SMART	ANK_2a	221	250	IPR002110	GO:0005515
	Phac6g01201	327	SMART	ANK_2a	188	217	IPR002110	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac6g01201	Phac-Chr6	15545345	15551825	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac6g01201	202	286	Ion Channels	AT2G25600	45.882	9.31e-13	67.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac6g01201	-		-	gsj:114380843	500.745