Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01162 ATGAAGCTTTCAACATCAGGTTTGGGGCAGCAGGGACTTGAAGTAGGGGAGAAGAAGTGTTTGAATTCTGAGCTATGGCATGCATGCGCGGGGCCCCTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTTGCTGCCACAACTAACAGAGAAATTGATGGACACATTCCCAATTACCCTAGCTTGCCACCCCAGTTAATTTGTCAACTACACAATGTCACAATGCATGCAGATGTTGAAACGGATGAAGTGTATGCTCAAATGACATTGCAGCCATTGACTCCGCAAGAGCAGAAAGATACATTTCTTCCTATGGAATTGGGCATTCCTAGTAAGCAGCCATCAAATTATTTTTGCAAGACGTTAACAGCCAGTGATACTAGTACGCATGGAGGATTCTCTGTTCCTCGTCGTGCTGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCACAGCAGCCACCGGCTCAGGAACTGATTGCCAGGGATCTCCATGATGTTGAATGGAAATTTCGGCATATTTTTCGGGGACAGCCAAAACGACACCTTCTTACTACAGGCTGGAGTATTTTTGTTAGTGCCAAGAGACTCGTGGCAGGAGATTCTGTCCTTTTCATATGGAATGAGAAGAATCAGCTTCTTTTGGGAATACGTCGTGCCAATAGACCACAAACTGTAATGCCATCATCAGTTCTATCCAGTGATAGCATGCACATTGGACTTCTTGCAGCTGCTGCCCATGCTGCAGCCACTAATAGCTGTTTTACCGTGTTTTATAATCCAAGGGCTAGTCCATCTGAGTTCGTCATACCACTTTCAAAATATATCAAAGCTGTGTACCATACTCGTATTTCTGTTGGTATGCGTTTCAGGATGCTTTTCGAGACTGAAGAGTCAAGTGTCCGCAGGTATATGGGTACAATAACTGGCATAAGTGATTTGGATTCTGTTCGGTGGCCGAATTCTCATTGGCGCTCTGTCAAGGTTGGTTGGGATGAATCAACAGCTGGGGAGAGACAACCACGAGTGTCTCTGTGGGAAATTGAGCCATTAACAACATTCCCTATGTATCCGTCATTATTTCCCCTTAGACTGAAACGTCCATGGCATCCTGGCTCCTCATCTCTGCATGATGGTAGTAGAGATGAAGCAAGTAATGGGCTGATGTGGCTGAGGGGTGGACCTGTAGACCAAGGTCTCAATTCCCTAAATTTTCAAGGAGGTGGTATGTTGCCCTGGATGCAGCAGAGAATGGATCCCACTTTACTAGGAAGTGATCAGAATCAACAGTACCAAGCCATGTTGGCAGCTGGTTTGCAGAATCTAGGTAGTGGATATCTCATGAAGCAACAAATGATGAATTTTCAACAGCCTTTCCACTATCTTCAGCAATCAGGAAACAGCAATTCTCCTTTGCAACTTCAGCCGCAGCAATCAATTCAACAATCTGTGTCTTCTAACATGCTGCAGCCACAAGCCCATGTATTGACAGAGAACCTCTCTCAGCACCTACTTCAGAAACCACACAACAATCAAGAAGTCCAAGCGCAACAGCAGCAACATTCTTTTCAAGACCCGCTCTTAATTCCAAGTGATCAGCTCCCTCAGAGACAACACTCCGGTGTTCCTTCTCCATCATATTCAAAACCAGATTTCTTGGATTCGAGCATGAAGTTCCCTGCTTCAGTTTCCCCCGGACAAAACATGCTTAGTTCACTTTGTCCCGAAGGAAGTGCAAATCTCTTGAATTTATCAAGGAGTGGTCCGTCTTTGCTGAGTGAACAGTTACCTCAACAGCAATGGACTCAAAAGTATGCACCTATGCAGGTCAATGCTTATGGAAGCACTGTGCAATATTCTGGAAAAGATTCTGCAATGGTGCTACCACATCTTAACTCAGATGCCCAAAATTCTACACTCTTTGGTGTCAATATCGATTCATCTGGGCTTCTTCTTCCCACCACAGTCCCTGGTTACAGTACCTCATCTGCGGATACTAATTCATCAACAATGCCATTAGGGGAGTCTGGTTTCCAGGGTTCTCTATTTGGTTGCATGCAAGATTCATCAGAGTTGTTGCAAAGTGCAGGGCATGTTGACCCACAAAACCAGACTCAAACCTTTGTGAAGGTATACAAATCAGGGTCAGTTGGGCGCTCACTTGACATATCTCGGTTCAGCAGCTATCATGAACTGCGCGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGAAAGTTGGAAGACCCTCCTAGATCAGGCTGGCAGCTTGTGTTCGTTGACAGGGAGAATGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTCGTCAATAATGTTTGGTATATCAAAATACTTTCACCTGAAGACATTCAGAAAATGGGGGAACAAGCGGTGGAATCCCTTGCTCTAGGTTCAGGACAAAGGCTAAATGGCACTGGTGCTGAGTCTCAGGACATTGTTTCTGGACCACCATCAATTGGCTCACTTGATTACTGA 2526 0.4553 MKLSTSGLGQQGLEVGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREIDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGSSSLHDGSRDEASNGLMWLRGGPVDQGLNSLNFQGGGMLPWMQQRMDPTLLGSDQNQQYQAMLAAGLQNLGSGYLMKQQMMNFQQPFHYLQQSGNSNSPLQLQPQQSIQQSVSSNMLQPQAHVLTENLSQHLLQKPHNNQEVQAQQQQHSFQDPLLIPSDQLPQRQHSGVPSPSYSKPDFLDSSMKFPASVSPGQNMLSSLCPEGSANLLNLSRSGPSLLSEQLPQQQWTQKYAPMQVNAYGSTVQYSGKDSAMVLPHLNSDAQNSTLFGVNIDSSGLLLPTTVPGYSTSSADTNSSTMPLGESGFQGSLFGCMQDSSELLQSAGHVDPQNQTQTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPPRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLALGSGQRLNGTGAESQDIVSGPPSIGSLDY* 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01162 841 FunFam Auxin response factor 126 230 - -
Phac6g01162 841 ProSiteProfiles PB1 domain profile. 715 799 IPR000270 GO:0005515
Phac6g01162 841 SMART B3_2 128 230 IPR003340 GO:0003677
Phac6g01162 841 Gene3D - 711 804 - -
Phac6g01162 841 MobiDBLite consensus disorder prediction 540 562 - -
Phac6g01162 841 Pfam AUX/IAA family 711 799 IPR033389 -
Phac6g01162 841 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Phac6g01162 841 MobiDBLite consensus disorder prediction 540 560 - -
Phac6g01162 841 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Phac6g01162 841 SUPERFAMILY CAD & PB1 domains 710 789 - -
Phac6g01162 841 CDD B3_DNA 127 228 IPR003340 GO:0003677
Phac6g01162 841 Gene3D - 126 229 IPR015300 -
Phac6g01162 841 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Phac6g01162 841 MobiDBLite consensus disorder prediction 471 496 - -
Phac6g01162 841 Gene3D - 292 364 - -
Phac6g01162 841 FunFam Auxin response factor 710 804 - -
Phac6g01162 841 MobiDBLite consensus disorder prediction 820 841 - -
Phac6g01162 841 FunFam Auxin response factor 292 364 - -
Phac6g01162 841 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 804 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phac6g01162 841 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01162 Phac-Chr6 15304109 15311696 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01162 98 807 B3 DNA Binding Superfamily AT5G37020 67.455 0.0 907
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phac6g01162 AUX_IAA 2.7e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01162 - - gmx:100784373 1583.16