Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01161 ATGAAGCTTTCAACATCAGGTTTGGGGCAGCAGGGACTTGAAGGGGAGAAGAAGTGTTTGAATTCTGAGCTATGGCATGCATGCGCGGGGCCCCTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTTGCTGCCACAACTAACAGAGAAATTGATGGACACATTCCCAATTACCCTAGCTTGCCACCCCAGTTAATTTGTCAACTACACAATGTCACAATGCATGCAGATGTTGAAACGGATGAAGTGTATGCTCAAATGACATTGCAGCCATTGACTCCGCAAGAGCAGAAAGATACATTTCTTCCTATGGAATTGGGCATTCCTAGTAAGCAGCCATCAAATTATTTTTGCAAGACGTTAACAGCCAGTGATACTAGTACGCATGGAGGATTCTCTGTTCCTCGTCGTGCTGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCACAGCAGCCACCGGCTCAGGAACTGATTGCCAGGGATCTCCATGATGTTGAATGGAAATTTCGGCATATTTTTCGGGGACAGCCAAAACGACACCTTCTTACTACAGGCTGGAGTATTTTTGTTAGTGCCAAGAGACTCGTGGCAGGAGATTCTGTCCTTTTCATATGGAATGAGAAGAATCAGCTTCTTTTGGGAATACGTCGTGCCAATAGACCACAAACTGTAATGCCATCATCAGTTCTATCCAGTGATAGCATGCACATTGGACTTCTTGCAGCTGCTGCCCATGCTGCAGCCACTAATAGCTGTTTTACCGTGTTTTATAATCCAAGGGCTAGTCCATCTGAGTTCGTCATACCACTTTCAAAATATATCAAAGCTGTGTACCATACTCGTATTTCTGTTGGTATGCGTTTCAGGATGCTTTTCGAGACTGAAGAGTCAAGTGTCCGCAGGTATATGGGTACAATAACTGGCATAAGTGATTTGGATTCTGTTCGGTGGCCGAATTCTCATTGGCGCTCTGTCAAGGTTGGTTGGGATGAATCAACAGCTGGGGAGAGACAACCACGAGTGTCTCTGTGGGAAATTGAGCCATTAACAACATTCCCTATGTATCCGTCATTATTTCCCCTTAGACTGAAACGTCCATGGCATCCTGGCTCCTCATCTCTGCATGATGGTAGTAGAGATGAAGCAAGTAATGGGCTGATGTGGCTGAGGGGTGGACCTGTAGACCAAGGTCTCAATTCCCTAAATTTTCAAGGAGGTGGTATGTTGCCCTGGATGCAGCAGAGAATGGATCCCACTTTACTAGGAAGTGATCAGAATCAACAGTACCAAGCCATGTTGGCAGCTGGTTTGCAGAATCTAGGTAGTGGATATCTCATGAAGCAACAAATGATGAATTTTCAACAGCCTTTCCACTATCTTCAGCAATCAGGAAACAGCAATTCTCCTTTGCAACTTCAGCCGCAGCAATCAATTCAACAATCTGTGTCTTCTAACATGCTGCAGCCACAAGCCCATGTATTGACAGAGAACCTCTCTCAGCACCTACTTCAGAAACCACACAACAATCAAGAAGTCCAAGCGCAACAGCAGCAACATTCTTTTCAAGACCCGCTCTTAATTCCAAGTGATCAGCTCCCTCAGAGACAACACTCCGGTGTTCCTTCTCCATCATATTCAAAACCAGATTTCTTGGATTCGAGCATGAAGTTCCCTGCTTCAGTTTCCCCCGGACAAAACATGCTTAGTTCACTTTGTCCCGAAGGAAGTGCAAATCTCTTGAATTTATCAAGGAGTGGTCCGTCTTTGCTGAGTGAACAGTTACCTCAACAGCAATGGACTCAAAAGTATGCACCTATGCAGGTCAATGCTTATGGAAGCACTGTGCAATATTCTGGAAAAGATTCTGCAATGGTGCTACCACATCTTAACTCAGATGCCCAAAATTCTACACTCTTTGGTGTCAATATCGATTCATCTGGGCTTCTTCTTCCCACCACAGTCCCTGGTTACAGTACCTCATCTGCGGATACTAATTCATCAACAATGCCATTAGGGGAGTCTGGTTTCCAGGGTTCTCTATTTGGTTGCATGCAAGATTCATCAGAGTTGTTGCAAAGTGCAGGGCATGTTGACCCACAAAACCAGACTCAAACCTTTGTGAAGGTATACAAATCAGGGTCAGTTGGGCGCTCACTTGACATATCTCGGTTCAGCAGCTATCATGAACTGCGCGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGAAAGTTGGAAGACCCTCCTAGATCAGGCTGGCAGCTTGTGTTCGTTGACAGGGAGAATGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTCGTCAATAATGTTTGGTATATCAAAATACTTTCACCTGAAGACATTCAGAAAATGGGGGAACAAGCGGTGGAATCCCTTGCTCTAGGTTCAGGACAAAGGCTAAATGGCACTGGTGCTGAGTCTCAGGACATTGTTTCTGGACCACCATCAATTGGCTCACTTGATTACTGA 2523 0.4554 MKLSTSGLGQQGLEGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREIDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGSSSLHDGSRDEASNGLMWLRGGPVDQGLNSLNFQGGGMLPWMQQRMDPTLLGSDQNQQYQAMLAAGLQNLGSGYLMKQQMMNFQQPFHYLQQSGNSNSPLQLQPQQSIQQSVSSNMLQPQAHVLTENLSQHLLQKPHNNQEVQAQQQQHSFQDPLLIPSDQLPQRQHSGVPSPSYSKPDFLDSSMKFPASVSPGQNMLSSLCPEGSANLLNLSRSGPSLLSEQLPQQQWTQKYAPMQVNAYGSTVQYSGKDSAMVLPHLNSDAQNSTLFGVNIDSSGLLLPTTVPGYSTSSADTNSSTMPLGESGFQGSLFGCMQDSSELLQSAGHVDPQNQTQTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPPRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLALGSGQRLNGTGAESQDIVSGPPSIGSLDY* 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01161 840 Gene3D - 710 803 - -
Phac6g01161 840 SMART B3_2 127 229 IPR003340 GO:0003677
Phac6g01161 840 SUPERFAMILY CAD & PB1 domains 709 788 - -
Phac6g01161 840 Gene3D - 125 228 IPR015300 -
Phac6g01161 840 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Phac6g01161 840 Pfam AUX/IAA family 710 798 IPR033389 -
Phac6g01161 840 ProSiteProfiles PB1 domain profile. 714 798 IPR000270 GO:0005515
Phac6g01161 840 MobiDBLite consensus disorder prediction 470 495 - -
Phac6g01161 840 FunFam Auxin response factor 709 803 - -
Phac6g01161 840 SUPERFAMILY DNA-binding pseudobarrel domain 111 256 IPR015300 -
Phac6g01161 840 MobiDBLite consensus disorder prediction 819 840 - -
Phac6g01161 840 MobiDBLite consensus disorder prediction 539 561 - -
Phac6g01161 840 Gene3D - 291 363 - -
Phac6g01161 840 FunFam Auxin response factor 291 363 - -
Phac6g01161 840 FunFam Auxin response factor 125 229 - -
Phac6g01161 840 MobiDBLite consensus disorder prediction 539 559 - -
Phac6g01161 840 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Phac6g01161 840 CDD B3_DNA 126 227 IPR003340 GO:0003677
Phac6g01161 840 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 803 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phac6g01161 840 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01161 Phac-Chr6 15304109 15311696 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01161 97 806 B3 DNA Binding Superfamily AT5G37020 67.455 0.0 907
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phac6g01161 AUX_IAA 2.7e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01161 - - gmx:100784373 1579.69