Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01136 ATGGATAACCCTTATGTTACAATTGGTTCATTTGATCGCACAAATCTTTTCTATGGTGTCAAACTATTGAACCGTGGACAATCTTTTATTGATGAGCTTGTGCGGGAAATTTCAAAAGAAGTTGCTACTGGTGGTTCAACTATAATTTATTGCACTACAATCAAAGATGTAGAGCAGATATTCAAGTCATTTACAGAAGCAGGCATTGAGGCAGGAATGTACCATGGCCAAATGAATGGAAAAGATCGAGAGGAGTCTCATAGATTATTTGTTAGAGATGAACTGCAAGTTATGGTGGCAACCATTGCCTTTGGCATGGGCATAGATAAACCTAACATTAGACAAGTGATTCACTATGGTTGCCCTAAAAGTCTTGAGTCCTACTACCAGGAAAGTGGACGATGTGGTAGAGATGGTATAGCTTCGGTTTGTTGGCTTTACTACACAAGAAGTGACTTTGCAAAGGGCGACTTTTACTGTGGAGATGTAAAATCAGAAAAACAAAGAAAAGCTGTTATGGAGTCATTGCTTGCTGCTGAACACTATTGTGTGCTGACCACATGCAGAAGAAAGTACTTGCTTGAATACTTTGGGGAAAAAAATTCAGCTGATAGATGTGGGAACTGTGATAATTGCAAAGTCTCAAAGAAGGAGCGTGACATGTCAAGGGAAGCATTTCTTCTAATGGCTTGCATTCATTCATGCAAGGGCAGATGGGGCCTTAATATGCCTATTGATGTCCTGCGTGGGTCTCGAGTTAAGAAAATTCTTGAGGCTCAGTTTGATAAGCTTCCACTTCATGGGCTGGGGAAAAATTATCCAGCAAATTGGTGGAAATCACTTGGGCATCAATTGATTTCTCGAGGTTATTTGAAGGAGACTGTTAGTGACGTCTACAGAACTATAAGTGTCAGTTCAAAAGGAGAGCAGTTTTTGGCCTCTTCTACACCAGATTATCAACCTCCTTTGATTTTGACATTAACTGCTGAAATGTTTGGAGAAGAAGATAATGGAAACACACAAGAAGAATTCAAAACTTTATCCACTTCAGAATTAGAAGGTTTTTCAGAGGCTGAGAAAAAGTTCCACCAAATGCTTTTGGAAGAAAGATTAGAGCTTGCAAGAAGTGTTGGAACAGCTCCATATGCTATATGTGGTGATCAAACGATCAGGAAAATTGCTTTGACAAGACCATCTACAAAAGCAAGACTAGCAAACATTAATGGTGTAAATCAGCACCTAGTTACAAAATATGGAGATCATTTTCTTCAAGTTATTCTGAAACTGTCGCAAGGATTAAACCTATCATTGGATGGGGAAGAAAAGGTTCCAGTGGCTAGTTTGCAAACTAATGGAGTAACGAAAGTATCTCCACTAACCAACAAATCCAAGAAGTTGACATCAGCAAAGTTTGAAGCATGGAAAAAATGGCATGAAGATGGTCTTTCTATTCACGAGATAGCTAACTTAGAATCTAGATCGGCTCCTATAAAAGAACAAACTGTTGCTGAATATCTGCTGGAAGCTGCTCAAGAAGGATTACCTTTTGATTGGGTTAGATTCAGCAAGATGATAGGACTGACACAAGAGATCATATCAGAAATTCAGGGTGCTATTTCAAAAGTTGGATCTACAGACAAGCTGAAGCCTATAAAAAATGAATTGCCAGAAGATATAAGTTATCAGCACATCAAGACTTATTTGTCAATGCGAAACTGTGGCATATCCTTGGAAACATTTCAATCAGGAAGCAACCAGACTGAGAAAGATGAACTTGCATACAATGCTTCAAATTTTTCAGACTCTACTTTAGAAACATGTCCTGACAGACATTGTGAAGATGACATTTCTGCAAAAAGTTTGGCTGAACAACGCGACTTGGAAATGGATGAGGTACCTTCTTTACCTGTCAACAGTTCTGAGGAACAGAAGCTCTCAAATGCCAGTGAAGGGGAATTCACAAGAAAACGACAAAAGGTCTGTGAAACGAATGAAGAAAATTCAACTAAATTGAAAGCTACAGAGAGTTCTGTTGTGGAGTGGATGAAGAACCTTGATGAAGGGGCTACGTTGAGCACTATTTTGGAACACTTCAATGGATCCAGTGAAGATTCTGTGGTTGAACTGATAAATGGCCTAGAGTGTGACTTTTTAATATATAGGAAAGGGAACGTGTATAGGGTTTTGTAA 2190 0.389 MDNPYVTIGSFDRTNLFYGVKLLNRGQSFIDELVREISKEVATGGSTIIYCTTIKDVEQIFKSFTEAGIEAGMYHGQMNGKDREESHRLFVRDELQVMVATIAFGMGIDKPNIRQVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYCGDVKSEKQRKAVMESLLAAEHYCVLTTCRRKYLLEYFGEKNSADRCGNCDNCKVSKKERDMSREAFLLMACIHSCKGRWGLNMPIDVLRGSRVKKILEAQFDKLPLHGLGKNYPANWWKSLGHQLISRGYLKETVSDVYRTISVSSKGEQFLASSTPDYQPPLILTLTAEMFGEEDNGNTQEEFKTLSTSELEGFSEAEKKFHQMLLEERLELARSVGTAPYAICGDQTIRKIALTRPSTKARLANINGVNQHLVTKYGDHFLQVILKLSQGLNLSLDGEEKVPVASLQTNGVTKVSPLTNKSKKLTSAKFEAWKKWHEDGLSIHEIANLESRSAPIKEQTVAEYLLEAAQEGLPFDWVRFSKMIGLTQEIISEIQGAISKVGSTDKLKPIKNELPEDISYQHIKTYLSMRNCGISLETFQSGSNQTEKDELAYNASNFSDSTLETCPDRHCEDDISAKSLAEQRDLEMDEVPSLPVNSSEEQKLSNASEGEFTRKRQKVCETNEENSTKLKATESSVVEWMKNLDEGATLSTILEHFNGSSEDSVVELINGLECDFLIYRKGNVYRVL* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01136 729 Gene3D - 215 338 IPR036388 -
Phac6g01136 729 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 29 192 IPR001650 -
Phac6g01136 729 FunFam ATP-dependent DNA helicase 13 214 - -
Phac6g01136 729 Gene3D - 13 214 IPR027417 -
Phac6g01136 729 FunFam ATP-dependent DNA helicase 215 339 - -
Phac6g01136 729 Pfam HRDC domain 364 426 IPR002121 GO:0003676
Phac6g01136 729 Pfam Helix-turn-helix domain 472 568 IPR029491 -
Phac6g01136 729 SMART RQC_2 220 324 IPR018982 GO:0006260|GO:0006281|GO:0043138
Phac6g01136 729 Pfam Helicase conserved C-terminal domain 32 138 IPR001650 -
Phac6g01136 729 NCBIfam RecQ family ATP-dependent DNA helicase 2 271 IPR004589 GO:0004386|GO:0006310
Phac6g01136 729 PANTHER DNA HELICASE RECQ FAMILY MEMBER 7 501 - -
Phac6g01136 729 SMART helicmild6 58 139 IPR001650 -
Phac6g01136 729 SMART hrdc7 356 436 IPR002121 GO:0003676
Phac6g01136 729 Pfam RecQ zinc-binding 158 213 IPR032284 -
Phac6g01136 729 CDD SF2_C_RecQ 13 148 - -
Phac6g01136 729 Pfam RQC domain 217 313 IPR018982 GO:0006260|GO:0006281|GO:0043138
Phac6g01136 729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 261 IPR027417 -
Phac6g01136 729 Gene3D HRDC domain 354 435 IPR044876 -
Phac6g01136 729 ProSiteProfiles HRDC domain profile. 356 436 IPR002121 GO:0003676
Phac6g01136 729 MobiDBLite consensus disorder prediction 631 661 - -
Phac6g01136 729 SUPERFAMILY HRDC-like 356 430 IPR010997 GO:0000166|GO:0044237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01136 Phac-Chr6 15174762 15184912 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01136 48 155 Eukaryotic Initiation Factors Gene Family AT3G19760 27.778 1.44e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01136 K03654 - gmx:100797777 1251.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac6g01136 6 15174762 15184912 Phac6g01136 6 15174762 15184912 ECH