Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01101 ATGTCGTATGTGCCTCCGCACCTCAGAAATAACAGCTCCGCCACCGTCGCCACCGCCAGAACCCCCTCCGTAACCCTAGATAACAACAACCACCACCACCACAATAACAACCACCACAAGCTCGCATTCGCCTCCAATAACAACACCAACGCCAATTGCTCTCCCTCGCTCCCCTCCTTCCACAATGCCTCTCGCCGGAGCTCCGCCGCGCCTCCGTCGCCGCGGATATTCGCGACCCCTGACCCCGTCTTCCCGCAATGGCAACCCTCAGAACGCGCTTCGCGCATGACTCCGGAGCAGATCGAAGAGGTCCGTTCCCGGCTTAATCTTGACGTTACTGTTGCATCTGATTCTCCTCCCGCACCTGCACCAATAGAATCGTTTACTGATATGTGTTTGGACTCAAGTATCATGAAGGATATTGCTTACCATGAATACACCAGGCCAACTTCAATCCAGGCACAGGCCATGCCAATTGCTCTCAGTGGAAGGGATCTATTGGGTTGTGCTGAAACTGGTAGTGGAAAGACCGCAGCTTTCACAATTCCTATGATACAGCATTGCTTGGCCCAACCTTCAATTCGGCGCAATGATGGTCCTTTGGCATTAGTTTTGGCTCCTACCAGAGAACTTGCTCAACAAATAGAAAAAGAGGTTAAAGCTTTTAGCAGATCCCTCGAGTCATTAAAAACTGCTATAGTTGTGGGCGGAACTAACATTGAAAAGCAGAGGTCGGAACTTAGAGCCGGGGTTGAAATAGCAGTTGCCACACCTGGAAGATTCATTGATCACTTACAACAAGGCAATACTTCCCTCTCTAGAATTTCTTTTGTTGTTCTAGACGAGGCAGATAGAATGCTGGATATGGGTTTTGAACCACAGATAAGAGAGGTAATGAGAAGTCTTCCAGAGAAGCATCAAACATTGCTTTTTAGTGCGACAATGCCTGTGGAGATTGAAGCATTAGCAAAGGAGTACTTGGCTAGCCCAGTGCAAGTGAAGGTGGGGAAAGTGAGTAGTCCAACAACTAATGTTTCGCAAACGCTTGTGAAAATTTCTGAAAACGAGAAGATTGACCGACTTCTAGATTTACTTGTAGAGGATGCATCACAGGCTGAAAAATGTGGTCATCCATTTCCATTAACAATTGTGTTCGTTGAGAGGAAGACAAGGTGCGATGAAGTTGCTGAAGCATTGGTAGCTCAAGGATTATCTGCAGTTTCTCTTCATGGTGGTCGTAGTCAGAATGAAAGAGAGGCTGCCTTGCATGATTTTCGGAGTGGCTCTACCAACATTTTGGTTGCCACTGATGTTGCATCTCGTGGCTTGGATGTCACTGGAGTGTCCCATGTCATCAATCTAGATCTTCCTAAGCCTCCGTTATGGCTGCCTCACTTATAG 1401 0.4775 MSYVPPHLRNNSSATVATARTPSVTLDNNNHHHHNNNHHKLAFASNNNTNANCSPSLPSFHNASRRSSAAPPSPRIFATPDPVFPQWQPSERASRMTPEQIEEVRSRLNLDVTVASDSPPAPAPIESFTDMCLDSSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQPSIRRNDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSELRAGVEIAVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRSLPEKHQTLLFSATMPVEIEALAKEYLASPVQVKVGKVSSPTTNVSQTLVKISENEKIDRLLDLLVEDASQAEKCGHPFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGRSQNEREAALHDFRSGSTNILVATDVASRGLDVTGVSHVINLDLPKPPLWLPHL* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01101 466 SMART helicmild6 393 465 IPR001650 -
Phac6g01101 466 MobiDBLite consensus disorder prediction 24 96 - -
Phac6g01101 466 CDD SF2_C_DEAD 345 458 - -
Phac6g01101 466 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 357 466 IPR001650 -
Phac6g01101 466 Gene3D - 335 461 IPR027417 -
Phac6g01101 466 Gene3D - 86 334 IPR027417 -
Phac6g01101 466 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 272 463 IPR027417 -
Phac6g01101 466 Pfam Helicase conserved C-terminal domain 357 458 IPR001650 -
Phac6g01101 466 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 279 287 IPR000629 -
Phac6g01101 466 MobiDBLite consensus disorder prediction 40 69 - -
Phac6g01101 466 Coils Coil 212 232 - -
Phac6g01101 466 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 157 333 IPR014001 -
Phac6g01101 466 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 126 154 IPR014014 GO:0003724
Phac6g01101 466 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 93 460 - -
Phac6g01101 466 SMART ultradead3 145 348 IPR014001 -
Phac6g01101 466 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 335 IPR027417 -
Phac6g01101 466 Pfam DEAD/DEAH box helicase 150 320 IPR011545 GO:0003676|GO:0005524
Phac6g01101 466 CDD DEADc 137 334 - -
Phac6g01101 466 FunFam probable ATP-dependent RNA helicase DDX17 86 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01101 Phac-Chr6 14888237 14897757 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01101 126 460 Eukaryotic Initiation Factors Gene Family AT3G13920 35.103 2.71e-59 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01101 K12823 - gmx:100818387 796.193