Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Phac6g01100 | ATGTCGTATGTGCCTCCGCACCTCAGAAATAACAGCTCCGCCACCGTCGCCACCGCCAGAACCCCCTCCGTAACCCTAGATAACAACAACCACCACCACCACAATAACAACCACCACAAGCTCGCATTCGCCTCCAATAACAACACCAACGCCAATTGCTCTCCCTCGCTCCCCTCCTTCCACAATGCCTCTCGCCGGAGCTCCGCCGCGCCTCCGTCGCCGCGGATATTCGCGACCCCTGACCCCGTCTTCCCGCAATGGCAACCCTCAGAACGCGCTTCGCGCATGACTCCGGAGCAGATCGAAGAGGTCCGTTCCCGGCTTAATCTTGACGTTACTGTTGCATCTGATTCTCCTCCCGCACCTGCACCAATAGAATCGTTTACTGATATGTGTTTGGACTCAAGTATCATGAAGGATATTGCTTACCATGAATACACCAGGCCAACTTCAATCCAGGCACAGGCCATGCCAATTGCTCTCAGTGGAAGGGATCTATTGGGTTGTGCTGAAACTGGTAGTGGAAAGACCGCAGCTTTCACAATTCCTATGATACAGCATTGCTTGGCCCAACCTTCAATTCGGCGCAATGATGGTCCTTTGGCATTAGTTTTGGCTCCTACCAGAGAACTTGCTCAACAAATAGAAAAAGAGGTTAAAGCTTTTAGCAGATCCCTCGAGTCATTAAAAACTGCTATAGTTGTGGGCGGAACTAACATTGAAAAGCAGAGGTCGGAACTTAGAGCCGGGGTTGAAATAGCAGTTGCCACACCTGGAAGATTCATTGATCACTTACAACAAGGCAATACTTCCCTCTCTAGAATTTCTTTTGTTGTTCTAGACGAGGCAGATAGAATGCTGGATATGGGTTTTGAACCACAGATAAGAGAGGTAATGAGAAGTCTTCCAGAGAAGCATCAAACATTGCTTTTTAGTGCGACAATGCCTGTGGAGATTGAAGCATTAGCAAAGGAGTACTTGGCTAGCCCAGTGCAAGTGAAGGTGGGGAAAGTGAGTAGTCCAACAACTAATGTTTCGCAAACGCTTGTGAAAATTTCTGAAAACGAGAAGATTGACCGACTTCTAGATTTACTTGTAGAGGATGCATCACAGGCTGAAAAATGTGGTCATCCATTTCCATTAACAATTGTGTTCGTTGAGAGGAAGACAAGGTGCGATGAAGTTGCTGAAGCATTGGTAGCTCAAGGATTATCTGCAGTTTCTCTTCATGGTGGTCGTAGTCAGAATGAAAGAGAGGCTGCCTTGCATGATTTTCGGAGTGGCTCTACCAACATTTTGGTTGCCACTGATGTTGCATCTCGTGGCTTGGATGTCACTGGAGTGTCCCATGTCATCAATCTAGATCTTCCTAAGACCATGGAAGATTATGTACACCGGATTGGAAGGACAGGGCGTGCAGGATCAACTGGCTTAGCAACTTCATTTTACACTGATCGTGACATGTTCCTTGTTGCAAATATAAGGAAGGCAATAGCTGATGCTGAATCTGGGAACACACTGACATTTGCAACCGGAAAGGTTGCTAGACGGAAGGAGAAAGAAGCAGCAGCTGCACAAAAAGAGGCAAATATTGCTTTATCCAAACAGTTAGGATTGGGAGCTGCTTCAATTAACATCGAAGATAAATATAAATTTATGATTGCTGCCGCAAACATTAAAAGAGAGGGCGCAGCAGATAGTGCCTGGGATGATTAA | 1716 | 0.4668 | MSYVPPHLRNNSSATVATARTPSVTLDNNNHHHHNNNHHKLAFASNNNTNANCSPSLPSFHNASRRSSAAPPSPRIFATPDPVFPQWQPSERASRMTPEQIEEVRSRLNLDVTVASDSPPAPAPIESFTDMCLDSSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQPSIRRNDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSELRAGVEIAVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRSLPEKHQTLLFSATMPVEIEALAKEYLASPVQVKVGKVSSPTTNVSQTLVKISENEKIDRLLDLLVEDASQAEKCGHPFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGRSQNEREAALHDFRSGSTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGLATSFYTDRDMFLVANIRKAIADAESGNTLTFATGKVARRKEKEAAAAQKEANIALSKQLGLGAASINIEDKYKFMIAAANIKREGAADSAWDD* | 572 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Phac6g01100 | 571 | Coils | Coil | 515 | 535 | - | - | |
Phac6g01100 | 571 | MobiDBLite | consensus disorder prediction | 24 | 96 | - | - | |
Phac6g01100 | 571 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 357 | 515 | IPR001650 | - | |
Phac6g01100 | 571 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 198 | 494 | IPR027417 | - | |
Phac6g01100 | 571 | Pfam | Helicase conserved C-terminal domain | 357 | 474 | IPR001650 | - | |
Phac6g01100 | 571 | FunFam | probable ATP-dependent RNA helicase DDX17 | 86 | 336 | - | - | |
Phac6g01100 | 571 | Gene3D | - | 339 | 533 | IPR027417 | - | |
Phac6g01100 | 571 | SMART | helicmild6 | 393 | 474 | IPR001650 | - | |
Phac6g01100 | 571 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 279 | 287 | IPR000629 | - | |
Phac6g01100 | 571 | PANTHER | ATP-DEPENDENT RNA HELICASE RHLE-RELATED | 93 | 526 | - | - | |
Phac6g01100 | 571 | MobiDBLite | consensus disorder prediction | 40 | 69 | - | - | |
Phac6g01100 | 571 | Coils | Coil | 212 | 232 | - | - | |
Phac6g01100 | 571 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 157 | 333 | IPR014001 | - | |
Phac6g01100 | 571 | Pfam | DEAD/DEAH box helicase | 150 | 320 | IPR011545 | GO:0003676|GO:0005524 | |
Phac6g01100 | 571 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 126 | 154 | IPR014014 | GO:0003724 | |
Phac6g01100 | 571 | SMART | ultradead3 | 145 | 348 | IPR014001 | - | |
Phac6g01100 | 571 | CDD | DEADc | 137 | 334 | - | - | |
Phac6g01100 | 571 | CDD | SF2_C_DEAD | 345 | 483 | - | - | |
Phac6g01100 | 571 | Gene3D | - | 86 | 337 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Phac6g01100 | Phac-Chr6 | 14888237 | 14897757 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Phac6g01100 | 126 | 496 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 35.467 | 3.25e-69 | 227 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Phac6g01100 | K12823 | - | gmx:100818387 | 998.038 |