Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01078 ATGACCAGAAGAAAGGTGAAATTTGCATTCATAGAAAATGATTCTGCAAGGAAGACAACATACAAGAAAAGGAAAAAGGGAGTGTTGAAGAAGATTGAGGAACTCAGCACCCTTTGTGGCATTGATGCATGTGCTATAGTTTATGGTCCCGATGATCATGAGCCAGAGGTTTGGCCATCCCATAGTGGGGTCCAAAGGGTGGTGGAAAGGTTCAGGAATATGCCTGCAGTGGAGAAAATCAAGAAGATGGTGAACCAAGAGAGCTTCATAGGACAAAGGATCCAAAAGGGTAAGGAGCAAATGATGAAACTTATGAAGGACAATGCGGAGAAGGAGTTGACCTTGTTCATGTTTCAGTGCCTTACTGAAGGGAGGGTTTTGCCACATGAAAATAACATGACCTTTGCTGATTTGAATGTCCTTTCATCAGTGATTGAACAGAACTTGGAAGACATTGGTAATAGGTTGCAAACTCTGAATGTTAATAAGATACAACCAAATCAACAACTCCAGATGCAAACATCAGTGTTCCAACCACAGTTGAAAACAGCATCATACCAACCCCATTTGCAAACACCATCTTCCCAACGCCATTTGCAAATGACAGTGATGAGTTCTGGACATGGGTTGGATATGGATGTTAACCCCATGCAAAGGTTGTTGTTTATGGACTTGCTTAATGGTGATAGAGATGAGACAATAATGCCTCCTTTTGGTGATCCTAATCTCCAGTTTTGGCCAAACCTAGGCTTAAAGGTGCAACTCACATTCATAGCCAATAATTCAGATAGGAAGGCATCATTCATCAAAAGGAAGAAGTCATTGCTGAAGAAGACGGAGGAAATCAGCACCCTTTGTGGTGTTGAAGCATGCACAATAGTTTATGGCCCTTATGGTCCTGAGCCAGATGTTTGGATATCCAAATCGGGTGTTCAAAATGTGGTGGAAAGGTTCAGGAATACATGTGAGCACAACAAGAAGATGGCGACCCAAGAGAGTTTCCTTTCAGACAGAATCGCCAAGGGTAGAGAGAAGATGAAGAAACATGTTAGGAGCAACCAAGAGAAGGAGATGACCATGTTCATGTTTCAGTGCCTTAAGAATGGGAGGGTTGAGCTTCACAATAACATGACCACAGATGATTTGAATGTTCTTTCATCAGTGATTGAAAACAAGCTGAGGGACATTAATAAAAGGATGGAAACTGTGAATGTTACTGAGATGCCACCAAACCAACCCCAGATGGAACTACCAGCACTACCAGTAGCAGCAGCACCTGAAGACATCACACCACCAAATCATGGCGATGGGACATATATGAATGCTAATGACCCCTTGCAAAGCCAGTGGTTTATGGAGTTGCTTAATGATAATGGTGATTATGAGACAATAAAGCCTTCATTTGGAGATCCTAATCTCCCACCACTCTAA 1431 0.4228 MTRRKVKFAFIENDSARKTTYKKRKKGVLKKIEELSTLCGIDACAIVYGPDDHEPEVWPSHSGVQRVVERFRNMPAVEKIKKMVNQESFIGQRIQKGKEQMMKLMKDNAEKELTLFMFQCLTEGRVLPHENNMTFADLNVLSSVIEQNLEDIGNRLQTLNVNKIQPNQQLQMQTSVFQPQLKTASYQPHLQTPSSQRHLQMTVMSSGHGLDMDVNPMQRLLFMDLLNGDRDETIMPPFGDPNLQFWPNLGLKVQLTFIANNSDRKASFIKRKKSLLKKTEEISTLCGVEACTIVYGPYGPEPDVWISKSGVQNVVERFRNTCEHNKKMATQESFLSDRIAKGREKMKKHVRSNQEKEMTMFMFQCLKNGRVELHNNMTTDDLNVLSSVIENKLRDINKRMETVNVTEMPPNQPQMELPALPVAAAPEDITPPNHGDGTYMNANDPLQSQWFMELLNDNGDYETIKPSFGDPNLPPL* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01078 476 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac6g01078 476 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac6g01078 476 PANTHER MADS BOX PROTEIN 3 156 - -
Phac6g01078 476 FunFam Agamous-like MADS-box protein AGL80 260 343 - -
Phac6g01078 476 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 257 299 IPR002100 GO:0003677|GO:0046983
Phac6g01078 476 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Phac6g01078 476 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Phac6g01078 476 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Phac6g01078 476 ProSiteProfiles MADS-box domain profile. 252 299 IPR002100 GO:0003677|GO:0046983
Phac6g01078 476 SMART madsneu2 252 307 IPR002100 GO:0003677|GO:0046983
Phac6g01078 476 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phac6g01078 476 SUPERFAMILY SRF-like 252 332 IPR036879 GO:0003677|GO:0046983
Phac6g01078 476 CDD MADS_SRF_like 252 329 IPR033897 GO:0000981|GO:0000987|GO:0045944
Phac6g01078 476 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Phac6g01078 476 Gene3D - 260 342 IPR036879 GO:0003677|GO:0046983
Phac6g01078 476 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Phac6g01078 476 FunFam agamous-like MADS-box protein AGL80 13 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01078 Phac-Chr6 14641548 14646483 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01078 252 433 Type I MADS-box Gene Family AT5G48670 45.699 5.81e-37 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phac6g01078 SRF-TF 3.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01078 - - vun:114188526 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac6g01078 6 14641548 14646483 Phac6g01078 6 14641548 14646483 ECH