Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01076 ATGACAGGGAGAAAGGTGAAACTGGCATTCATAGCCAATGATTGTGCCAGGAGGGCATCGTATAGAAGGAGGAAGAAGTCAATGTTGAAGAAGATTAAAGAACTGAGCACCCTTTGTGGAGTAGAAGCATGTGCCATAGTGTATAGCCCCTTTGATCAAGAGCCACAGATTTGGCCATCCGAATCAGGTGTCCAAGATGTGGTTGAAAAGTTCAGGACCATGGCTGAATGGAAGAAGCACAAGATGGGGAATCAGGAGAGTGTCATGGAAAAAAGTATAGTGAAGGGTAAAAGGAAGATTAGGAAACTTGAGGAGGAGAATAAGGAAATGGAGATTACCATGTTCATGTTTCAATGCCTTAATTCGAGTAGGGTTCAGCCTCAACATCATATGACCTTGGCAGATTTGAATCTTCTTTCATCTGTGATTGAACAGAAATTGAACGACATTAGTAGAAGGTTGGAATTTACAAATGTTACTGAGGCACCATACCAACCCCAGATACAGCCATTTGTAGATACTAATCTTAAACTCTAA 537 0.4134 MTGRKVKLAFIANDCARRASYRRRKKSMLKKIKELSTLCGVEACAIVYSPFDQEPQIWPSESGVQDVVEKFRTMAEWKKHKMGNQESVMEKSIVKGKRKIRKLEEENKEMEITMFMFQCLNSSRVQPQHHMTLADLNLLSSVIEQKLNDISRRLEFTNVTEAPYQPQIQPFVDTNLKL* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01076 178 Coils Coil 93 113 - -
Phac6g01076 178 SUPERFAMILY SRF-like 4 82 IPR036879 GO:0003677|GO:0046983
Phac6g01076 178 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Phac6g01076 178 FunFam agamous-like MADS-box protein AGL80 13 96 - -
Phac6g01076 178 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Phac6g01076 178 CDD MADS_SRF_like 2 76 IPR033897 GO:0000981|GO:0000987|GO:0045944
Phac6g01076 178 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Phac6g01076 178 PANTHER MADS BOX PROTEIN 5 126 - -
Phac6g01076 178 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01076 Phac-Chr6 14628918 14629454 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01076 1 156 Type I MADS-box Gene Family AT5G48670 47.771 2.44e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phac6g01076 SRF-TF 8.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01076 - - pvu:PHAVU_006G077900g 337.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac6g01076 6 14628918 14629454 Phac6g01076 6 14628918 14629454 ECH