Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01075 ATGACGAGAGCCAAGATTGAACTTGCTTACATAACCGATCCTGGGAAAAGGAAGGCAACCTTTAAGAAAAGAAAGAATGGTTTGATGAAAAAGATCAGTGAAATCACTGTCCTATGTGGGATTGATGCATGTGCTGTAGTTTATAGTCCTGATGTGCCTAATAAGCCAGAGATTTGGCCATCTGAATCTGGAGCCAGGAGTGTGATTTCCAAGTTCAATGGTGTGTCAGAGGCTGAGAAAACCAAGAAAATGTTCTGCCAAGAGAGCTTTATAAGGCAGAGAATTGACAAAAGCCAAGAACAGCTGAAGAAACTAAAGAATGAAAATAGGAAGAGAGAGATTAGCCTTCTTATGTGTGAATATCTCACTCATGGGAGCAACAACCTTGACAGCAACAACATGAATTATCTGAAAGATTTCTCCTTTTTCACTGATCAAAACTTAGATGAAATTAGAAAGAAAATCACTGTGCATCAAGCACAAGAGGAGACACCAGTGATTTACAGAAGAGGAGAGCAAGCACATGCTCAAGGGCATGGGACCAATTTTTCCAGGAAAAGAAAACTGAATTAG 573 0.3979 MTRAKIELAYITDPGKRKATFKKRKNGLMKKISEITVLCGIDACAVVYSPDVPNKPEIWPSESGARSVISKFNGVSEAEKTKKMFCQESFIRQRIDKSQEQLKKLKNENRKREISLLMCEYLTHGSNNLDSNNMNYLKDFSFFTDQNLDEIRKKITVHQAQEETPVIYRRGEQAHAQGHGTNFSRKRKLN* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01075 190 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Phac6g01075 190 Gene3D - 13 120 IPR036879 GO:0003677|GO:0046983
Phac6g01075 190 Coils Coil 88 115 - -
Phac6g01075 190 FunFam Agamous-like MADS-box protein AGL80 13 99 - -
Phac6g01075 190 PANTHER MADS BOX PROTEIN 3 157 - -
Phac6g01075 190 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Phac6g01075 190 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Phac6g01075 190 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Phac6g01075 190 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Phac6g01075 190 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac6g01075 190 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01075 Phac-Chr6 14617230 14618171 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01075 5 157 Type I MADS-box Gene Family AT1G65300 44.516 2.02e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phac6g01075 SRF-TF 7.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01075 - - var:108342715 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac6g01075 6 14617230 14618171 Phac6g01075 6 14617230 14618171 ECH