Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01074 ATGGCTAGAAAGAAGGTCGACCTTACTTTCATAACCAAAACCTCAAAGAGGAAGGCAACCTTCAAGAAAAGGAAAAATGGTTTGGTAAAAAAAATTGGTGAAATCAGCATCCTTTGTGGGATTCAAGCATGTGCTATAATCTATTCCCCGGATGAGCCTGATCATCCAGAGGTTTGGCCATCTGAGGAGGGAGTTGAGAGTGCTATTTCCAGGTTCAGGAGTGTGTCTGAACTGGAGCAAAGCAAGAAAATGTTCTGTCAGGAAAGCTTCTTGAGGCAAAGAATTGTGAAAGTCCAAGAACAGCTGAAGAAAGTGAGGAATGAGAATAGGAAGAAAGAGATTGGCCATCTGATTTCTCAATACATCATTGTTGGGAACAACCTAGAGAGTGCCAACATCATTGACCTCAATGATATCTCATTCTTGGCTGATCAATGCTTGGAGGACATCACAAAGAAAATCATTGCTCGCAAAGCCCAAATGGTGACACCAGTTGCTGAAAATGGAGGACAAACTGTGACTCATGGAGAACAAGCACAAGTGAATCATGTCCAAGGGCCTTACACCGATGTTGATGCCATGCAAAACATGAATTGGTCTTCTGATATCATCAATGGTGGTGCTGCCAATGAGATGTTAGCATTGGAAGATGTTAATGTCCAAAGTGGTTGGCTTAACCAATATCTCCCTTGA 693 0.4228 MARKKVDLTFITKTSKRKATFKKRKNGLVKKIGEISILCGIQACAIIYSPDEPDHPEVWPSEEGVESAISRFRSVSELEQSKKMFCQESFLRQRIVKVQEQLKKVRNENRKKEIGHLISQYIIVGNNLESANIIDLNDISFLADQCLEDITKKIIARKAQMVTPVAENGGQTVTHGEQAQVNHVQGPYTDVDAMQNMNWSSDIINGGAANEMLALEDVNVQSGWLNQYLP* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01074 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac6g01074 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac6g01074 230 Coils Coil 88 115 - -
Phac6g01074 230 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Phac6g01074 230 FunFam Agamous-like MADS-box protein AGL80 13 99 - -
Phac6g01074 230 SUPERFAMILY SRF-like 3 96 IPR036879 GO:0003677|GO:0046983
Phac6g01074 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Phac6g01074 230 Gene3D - 14 119 IPR036879 GO:0003677|GO:0046983
Phac6g01074 230 PANTHER MADS BOX PROTEIN 3 127 - -
Phac6g01074 230 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Phac6g01074 230 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01074 Phac-Chr6 14608017 14609031 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01074 1 154 Type I MADS-box Gene Family AT5G48670 49.351 5.50e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phac6g01074 SRF-TF 4.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01074 - - vra:106752448 402.134