Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01071 ATGGCCAGAAAGAAGTTGGATCTCACATACATTACCAATGACTCAAAGAGGAAGACAACGTTAAAGAAAAGAAAACATGGTTTGATAAAGAAAATGAATGAAATTAGCACTCTTTGTGGGATTGAATCATGTGCCATAATCTATTCTCCAAATGATCCCCAGCCAGAGGTTTGGCCATCTGAGTCAGAAGTTCAAAGGGTGCTTTCCAAGTTCATGGAAATGTCTGAGCAGAAACAAAGTAGAAAGATGTTGAATCAGGAGAGCTTGTTGAAACAAATAATCATCAAAAGCCAACAACAGTTGTCAAGACAGAGGAATGAGAACAGGAAAAAAGAAATGACTCATCTTATGTTTCAGTACTTGAGTGTTGGGAGGATTTTTGACAACCCTAGTTTGATAGATTTGAATGATCTCTCATGGTTGATTGATCAGAACCTGAATGAAATAAAAAAGAAGATAACAATGATCCAAATCCAAGAAGTATCTCCGGTGACTGAAAATGGAGGAGAACATGGATACATGCATCATGTTCAAGGGCTAGAAAGCAAGATAGACACATTCAGAAGTAATATTGATCCATGA 582 0.3711 MARKKLDLTYITNDSKRKTTLKKRKHGLIKKMNEISTLCGIESCAIIYSPNDPQPEVWPSESEVQRVLSKFMEMSEQKQSRKMLNQESLLKQIIIKSQQQLSRQRNENRKKEMTHLMFQYLSVGRIFDNPSLIDLNDLSWLIDQNLNEIKKKITMIQIQEVSPVTENGGEHGYMHHVQGLESKIDTFRSNIDP* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01071 193 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phac6g01071 193 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac6g01071 193 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac6g01071 193 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Phac6g01071 193 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Phac6g01071 193 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
Phac6g01071 193 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Phac6g01071 193 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Phac6g01071 193 PANTHER MADS BOX PROTEIN 3 154 - -
Phac6g01071 193 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Phac6g01071 193 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01071 Phac-Chr6 14583680 14586236 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01071 1 157 Type I MADS-box Gene Family AT5G48670 51.592 2.02e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phac6g01071 SRF-TF 3.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01071 - - gmx:100797590 306.219