Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01047 ATGCAAGTTGAACCCCTGATATCAAGAATTCGCACTTCAGGGCTCAATATTTTCCAGCAGCTGAAGGTTTCTCAGCATTGTCTCCCTGATGAATTGAGTTCCGAAGATTTACAGCAATGTTCACATAAACTTAAGCTTTTGGGACACGAAGAAAGCTCATCAGTTATTAAGGAAGCTATTGTACAACTGGAATATGCAGGACCCAGTCCAGAGGTCCTGACAATAATTGCTGATAGACTGGGCCTAATGTCTAATCAGGATGTTCTTATTGAGGCTGTGGCCCTTGAAAGGTTGAAGGAGAATGCTGAACAATCTGAAAAGACCGAGGAGGCTGAATACATTGATCAAATGATTGCTGTCATAACACATATGCATGAGCGTCTCATTATGCTTAAGCAAGCTCAGAGTAGCAGCCCAGTTCCAATACCTGCTGATTTTTGTTGTCCTCTTTCTTTGGAGTTGATGACTGATCCTGTGATTGTAGCATCAGGGCAAACATATGAGCGAGCTTTCATCAAGAACTGGATTGATCTTGGGCTTACAGTTTGTCCAAAGACTCGTCAAACTCTGGCTCATACCAACCTAATACCTAATTATACTGTAAAAGCTCTAATTGCAAATTGGTGTGAATCTAACAATGTGCAACTAGTTGATCCCACAAAATCCACAAATCTAAATCAACCATCCGTCCTTCATGGGTATATGGAATCTGGTACAACCAGGGAGTCACCTGTTTTTACTCACCCCAGGAGCAACCAGCCATCCTCACCTGAGTCAGTACGTTCTCGCTCTTTTAGTTCACCAGGTAATAACATAACTTCTGGTGGGATTCAGCTAGAGGAAACATCATCACCTTTGCATCCCCGTTCAACTTCAGAAGGTTCCTTAAGTGGTACAATAAATGGGCAATATATGGATCTTGCAAGAATATCTCCTGCTGGTTTGGATGACAGGTCTGCTAGCTCAGATGAAAGCACTGTGGATTCAGCTAGCCAACCATCATTGTCACCATCTAGAAGGGAATCATCCAGTGCCTTTAGCTCTGAACAATCTCTAACCCATATTAGAGCTGTTTCTGACTCCAGTGCACTTTCTACTGCAAACTTTCCTCAAGAAACCCAAGATGATGACAACAATGCTCCTCATCTGTCAACAAGTCCAGGTCACAGTAGAGATGCTTCTGGTGAATTAAATACAGGGCCAGAAACTGCTGGTACTACTGCCATGCCATCAACACATAGAGAAGCTGAGTCCCCAGTCCGATTGTTTGAGACAAGGCCTCGAAGCCAAGCTATATGGAGGCGGCCATCAGAGAGGCTTGTTCCTAGGATAGCATCTCCTGCTATTGAAACAAGAGGTGATATTTCAGGTATTGAAGCCCAGGTCCGGAATTTGGTTGAGGGCTTGAGGAGCTCTGATCTGGATGCTCAGAAAGAGGCAACAGCAGAACTCCGTCTTCTTGCAAAGCACAATATGGATAATCGAATTGCGATTGCTAACTGTGGAGCCATTAACTTATTAGTTGATTTACTTAGATCAGCTGATACAGCGATCCAAGAAAATGCTGTTACCGCACTTCTAAACTTATCAATCAATGATAACAACAAAACTGAAATTGCAAGTGCTGGTGCAATTGAACCTCTGATTCACGTGCTTGAACATGGGAGCCCAGAAGCCAAGGAGAATTCTGCTGCCACTCTTTTCAGCTTATCAGTGATTGAGGAAAACAAGATTTTCATAGGGAGGTCTGGGGCAATTAGACCGCTGGTAGATTTATTGGGGAATGGGACCCCTAGGGGAAAGAAAGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCATGAAAACAAGAATCGGATTGTGCAAGCTGGTGCTGTGAGGCACCTTGTGGAGTTAATGGACCCAGCAGCTGGAATGGTTGACAAGGCAGTGGCTGTCTTAGCAAATCTAGCCACAATTCCAGAAGGAAGAAATGCAATTGGTGAAGAAGGAGGGATTCCTGTTCTGGTTGAGGTTGTTGAGTTGGGTTCTGCCAGAGGAAAGGAGAATGCAGCCGCAGCTCTTCTACATCTTTGCTTACATAGTCCCAAATTTTTAGGCAAGGTGCTTCAACAAGGAGCTGTCCCTCCATTAGTAGCTTTATCACAGTCAGGCACCCCAAGAGCCAAAGAAAAGGCCCAGGCTCTCCTCAATCAATTTAGAAGTCAAAGACATGGGAATGCTGGGAGGGGCTGA 2238 0.4415 MQVEPLISRIRTSGLNIFQQLKVSQHCLPDELSSEDLQQCSHKLKLLGHEESSSVIKEAIVQLEYAGPSPEVLTIIADRLGLMSNQDVLIEAVALERLKENAEQSEKTEEAEYIDQMIAVITHMHERLIMLKQAQSSSPVPIPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVQLVDPTKSTNLNQPSVLHGYMESGTTRESPVFTHPRSNQPSSPESVRSRSFSSPGNNITSGGIQLEETSSPLHPRSTSEGSLSGTINGQYMDLARISPAGLDDRSASSDESTVDSASQPSLSPSRRESSSAFSSEQSLTHIRAVSDSSALSTANFPQETQDDDNNAPHLSTSPGHSRDASGELNTGPETAGTTAMPSTHREAESPVRLFETRPRSQAIWRRPSERLVPRIASPAIETRGDISGIEAQVRNLVEGLRSSDLDAQKEATAELRLLAKHNMDNRIAIANCGAINLLVDLLRSADTAIQENAVTALLNLSINDNNKTEIASAGAIEPLIHVLEHGSPEAKENSAATLFSLSVIEENKIFIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIFHENKNRIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRNAIGEEGGIPVLVEVVELGSARGKENAAAALLHLCLHSPKFLGKVLQQGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGNAGRG* 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01047 745 SMART arm_5 573 613 IPR000225 GO:0005515
Phac6g01047 745 SMART arm_5 491 531 IPR000225 GO:0005515
Phac6g01047 745 SMART arm_5 532 572 IPR000225 GO:0005515
Phac6g01047 745 SMART arm_5 654 694 IPR000225 GO:0005515
Phac6g01047 745 SMART arm_5 614 653 IPR000225 GO:0005515
Phac6g01047 745 CDD RING-Ubox_PUB 143 195 IPR045210 -
Phac6g01047 745 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 502 544 IPR000225 GO:0005515
Phac6g01047 745 ProSiteProfiles U-box domain profile. 141 215 IPR003613 GO:0004842|GO:0016567
Phac6g01047 745 Pfam U-box domain 142 212 IPR003613 GO:0004842|GO:0016567
Phac6g01047 745 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 584 626 IPR000225 GO:0005515
Phac6g01047 745 MobiDBLite consensus disorder prediction 218 299 - -
Phac6g01047 745 Gene3D - 444 740 IPR011989 -
Phac6g01047 745 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 221 IPR013083 -
Phac6g01047 745 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 625 666 IPR000225 GO:0005515
Phac6g01047 745 SMART Ubox_2 145 208 IPR003613 GO:0004842|GO:0016567
Phac6g01047 745 SUPERFAMILY ARM repeat 461 734 IPR016024 -
Phac6g01047 745 SUPERFAMILY RING/U-box 133 219 - -
Phac6g01047 745 PANTHER U BOX DOMAIN-CONTAINING 9 734 - -
Phac6g01047 745 MobiDBLite consensus disorder prediction 314 429 - -
Phac6g01047 745 FunFam RING-type E3 ubiquitin transferase 141 216 - -
Phac6g01047 745 Pfam Armadillo/beta-catenin-like repeat 493 530 IPR000225 GO:0005515
Phac6g01047 745 Pfam Armadillo/beta-catenin-like repeat 532 571 IPR000225 GO:0005515
Phac6g01047 745 Pfam Armadillo/beta-catenin-like repeat 575 612 IPR000225 GO:0005515
Phac6g01047 745 FunFam RING-type E3 ubiquitin transferase 445 740 - -
Phac6g01047 745 Coils Coil 85 112 - -
Phac6g01047 745 MobiDBLite consensus disorder prediction 318 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01047 Phac-Chr6 14463542 14467829 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01047 102 745 U-box Gene Family AT2G23140 62.229 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01047 - - gmx:100811250 1219.14