Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g01046 ATGGAGATATCATTGTTAAAAATGATAGTAAATGGCATATCCTCATTTTTGCATTTATCAGTTTCTGGTAACATGAGCTCTGAACCTGTCTCAAAGTATTACCAGAAGGCAGAGGAAATACTTAAGTTGTTGAAGCCAATCATTGATGAGATTGTTAATTCTGAGTTAGCTTCTGATGAAGTGCTTAGTAAGATATTGGAAGAAATTGGTCTTGCCATCAATGAATTAAAGGAGCATGTTGAGAACTGGCACCTATTGTCTAGCAAAGTATACTTTGTTATGCAAGTTGAACCCCTGATATCAAGAATTCGCACTTCAGGGCTCAATATTTTCCAGCAGCTGAAGGTTTCTCAGCATTGTCTCCCTGATGAATTGAGTTCCGAAGATTTACAGCAATGTTCACATAAACTTAAGCTTTTGGGACACGAAGAAAGCTCATCAGTTATTAAGGAAGCTATTGTACAACTGGAATATGCAGGACCCAGTCCAGAGGTCCTGACAATAATTGCTGATAGACTGGGCCTAATGTCTAATCAGGATGTTCTTATTGAGGCTGTGGCCCTTGAAAGGTTGAAGGAGAATGCTGAACAATCTGAAAAGACCGAGGAGGCTGAATACATTGATCAAATGATTGCTGTCATAACACATATGCATGAGCGTCTCATTATGCTTAAGCAAGCTCAGAGTAGCAGCCCAGTTCCAATACCTGCTGATTTTTGTTGTCCTCTTTCTTTGGAGTTGATGACTGATCCTGTGATTGTAGCATCAGGGCAAACATATGAGCGAGCTTTCATCAAGAACTGGATTGATCTTGGGCTTACAGTTTGTCCAAAGACTCGTCAAACTCTGGCTCATACCAACCTAATACCTAATTATACTGTAAAAGCTCTAATTGCAAATTGGTGTGAATCTAACAATGTGCAACTAGTTGATCCCACAAAATCCACAAATCTAAATCAACCATCCGTCCTTCATGGGTATATGGAATCTGGTACAACCAGGGAGTCACCTGTTTTTACTCACCCCAGGAGCAACCAGCCATCCTCACCTGAGTCAGTACGTTCTCGCTCTTTTAGTTCACCAGGTAATAACATAACTTCTGGTGGGATTCAGCTAGAGGAAACATCATCACCTTTGCATCCCCGTTCAACTTCAGAAGGTTCCTTAAGTGGTACAATAAATGGGCAATATATGGATCTTGCAAGAATATCTCCTGCTGGTTTGGATGACAGGTCTGCTAGCTCAGATGAAAGCACTGTGGATTCAGCTAGCCAACCATCATTGTCACCATCTAGAAGGGAATCATCCAGTGCCTTTAGCTCTGAACAATCTCTAACCCATATTAGAGCTGTTTCTGACTCCAGTGCACTTTCTACTGCAAACTTTCCTCAAGAAACCCAAGATGATGACAACAATGCTCCTCATCTGTCAACAAGTCCAGGTCACAGTAGAGATGCTTCTGGTGAATTAAATACAGGGCCAGAAACTGCTGGTACTACTGCCATGCCATCAACACATAGAGAAGCTGAGTCCCCAGTCCGATTGTTTGAGACAAGGCCTCGAAGCCAAGCTATATGGAGGCGGCCATCAGAGAGGCTTGTTCCTAGGATAGCATCTCCTGCTATTGAAACAAGAGGTGATATTTCAGGTATTGAAGCCCAGGTCCGGAATTTGGTTGAGGGCTTGAGGAGCTCTGATCTGGATGCTCAGAAAGAGGCAACAGCAGAACTCCGTCTTCTTGCAAAGCACAATATGGATAATCGAATTGCGATTGCTAACTGTGGAGCCATTAACTTATTAGTTGATTTACTTAGATCAGCTGATACAGCGATCCAAGAAAATGCTGTTACCGCACTTCTAAACTTATCAATCAATGATAACAACAAAACTGAAATTGCAAGTGCTGGTGCAATTGAACCTCTGATTCACGTGCTTGAACATGGGAGCCCAGAAGCCAAGGAGAATTCTGCTGCCACTCTTTTCAGCTTATCAGTGATTGAGGAAAACAAGATTTTCATAGGGAGGTCTGGGGCAATTAGACCGCTGGTAGATTTATTGGGGAATGGGACCCCTAGGGGAAAGAAAGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCATGAAAACAAGAATCGGATTGTGCAAGCTGGTGCTGTGAGGCACCTTGTGGAGTTAATGGACCCAGCAGCTGGAATGGTTGACAAGGCAGTGGCTGTCTTAGCAAATCTAGCCACAATTCCAGAAGGAAGAAATGCAATTGGTGAAGAAGGAGGGATTCCTGTTCTGGTTGAGGTTGTTGAGTTGGGTTCTGCCAGAGGAAAGGAGAATGCAGCCGCAGCTCTTCTACATCTTTGCTTACATAGTCCCAAATTTTTAGGCAAGGTGCTTCAACAAGGAGCTGTCCCTCCATTAGTAGCTTTATCACAGTCAGGCACCCCAAGAGCCAAAGAAAAGGCCCAGGCTCTCCTCAATCAATTTAGAAGTCAAAGACATGGGAATGCTGGGAGGGGCTGA 2517 0.4311 MEISLLKMIVNGISSFLHLSVSGNMSSEPVSKYYQKAEEILKLLKPIIDEIVNSELASDEVLSKILEEIGLAINELKEHVENWHLLSSKVYFVMQVEPLISRIRTSGLNIFQQLKVSQHCLPDELSSEDLQQCSHKLKLLGHEESSSVIKEAIVQLEYAGPSPEVLTIIADRLGLMSNQDVLIEAVALERLKENAEQSEKTEEAEYIDQMIAVITHMHERLIMLKQAQSSSPVPIPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVQLVDPTKSTNLNQPSVLHGYMESGTTRESPVFTHPRSNQPSSPESVRSRSFSSPGNNITSGGIQLEETSSPLHPRSTSEGSLSGTINGQYMDLARISPAGLDDRSASSDESTVDSASQPSLSPSRRESSSAFSSEQSLTHIRAVSDSSALSTANFPQETQDDDNNAPHLSTSPGHSRDASGELNTGPETAGTTAMPSTHREAESPVRLFETRPRSQAIWRRPSERLVPRIASPAIETRGDISGIEAQVRNLVEGLRSSDLDAQKEATAELRLLAKHNMDNRIAIANCGAINLLVDLLRSADTAIQENAVTALLNLSINDNNKTEIASAGAIEPLIHVLEHGSPEAKENSAATLFSLSVIEENKIFIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIFHENKNRIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRNAIGEEGGIPVLVEVVELGSARGKENAAAALLHLCLHSPKFLGKVLQQGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGNAGRG* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g01046 838 MobiDBLite consensus disorder prediction 411 506 - -
Phac6g01046 838 MobiDBLite consensus disorder prediction 407 522 - -
Phac6g01046 838 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 677 719 IPR000225 GO:0005515
Phac6g01046 838 SMART arm_5 707 746 IPR000225 GO:0005515
Phac6g01046 838 SMART arm_5 747 787 IPR000225 GO:0005515
Phac6g01046 838 SMART arm_5 584 624 IPR000225 GO:0005515
Phac6g01046 838 SMART arm_5 625 665 IPR000225 GO:0005515
Phac6g01046 838 SMART arm_5 666 706 IPR000225 GO:0005515
Phac6g01046 838 SUPERFAMILY ARM repeat 554 827 IPR016024 -
Phac6g01046 838 Coils Coil 178 205 - -
Phac6g01046 838 CDD RING-Ubox_PUB 236 288 IPR045210 -
Phac6g01046 838 Gene3D - 537 833 IPR011989 -
Phac6g01046 838 SMART Ubox_2 238 301 IPR003613 GO:0004842|GO:0016567
Phac6g01046 838 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 595 637 IPR000225 GO:0005515
Phac6g01046 838 Pfam Armadillo/beta-catenin-like repeat 586 623 IPR000225 GO:0005515
Phac6g01046 838 Pfam Armadillo/beta-catenin-like repeat 625 664 IPR000225 GO:0005515
Phac6g01046 838 Pfam Armadillo/beta-catenin-like repeat 668 705 IPR000225 GO:0005515
Phac6g01046 838 SUPERFAMILY RING/U-box 226 312 - -
Phac6g01046 838 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 215 313 IPR013083 -
Phac6g01046 838 FunFam RING-type E3 ubiquitin transferase 538 833 - -
Phac6g01046 838 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 718 759 IPR000225 GO:0005515
Phac6g01046 838 Pfam U-box domain 235 305 IPR003613 GO:0004842|GO:0016567
Phac6g01046 838 MobiDBLite consensus disorder prediction 311 392 - -
Phac6g01046 838 PANTHER U BOX DOMAIN-CONTAINING 29 827 - -
Phac6g01046 838 ProSiteProfiles U-box domain profile. 234 308 IPR003613 GO:0004842|GO:0016567
Phac6g01046 838 FunFam RING-type E3 ubiquitin transferase 234 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g01046 Phac-Chr6 14463542 14471328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g01046 195 838 U-box Gene Family AT2G23140 62.229 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g01046 - - gmx:100811250 1379.77