Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00980 ATGCCAACCCAACCTGACTCACCCAACACGTTGACCCAAATGTTTCAGAACATCTTCTCAGACAACAGTAACATTATGCTTGCAGCCATCATTTCCCTTCTCCTTGTCATCCTTTTTGTCCTCCTTCTCCACCTCTATGCCAAATGGTTCCTTGCTCAGGCACAGGCTCAGGCACACGCCCGCCGTCGACGCCGCCGCCGACGAACGACGGTGACCGTCTCCGACGTCCTTGGCCCGGCAAGGTTCCACCACTTCCACGGCTTCAACATAGAAGACTCCTCACCCCTCTCAACCAAAGGCCTTGATTCTTCCACCATCAGAGCAATTCCTCTCTTCATCTATGAGCATAACAGGGCCAATGAAGATGAAGAACTCGATTGTGTGATTTGTTTGAGTGCCTTTGAGGGTGGTGAAGTGGGAAGGTGTTTGCCAAAGTGTGGCCATGGTTTTCATGTGGAGTGCATTGACATGTGGTTGAGTTCACACTCCAATTGTCCTATTTGTAGAGCCCCCATTGTAGTAAATGTTCTTGAGAGTGATTCTTCTCAGGTTGTGTCTTCAAGAGATCATGGTGATGAATATGGTGGTTCTGATTTTGAGATTGTGGTTGATGCTGGTTCCGATGAGAGTAGAGAGAGTGAGACCGGGAGTGGCAATGGTAATGGTAATGCCAACGGAGGAGCAAGAACAAGTGTTTCTGTGTCAGAAACTTCTTTCTCATTTTTTGGGTGCTCTTTGGAGAGAATGCTTGGCAAGGTTTTCCCATCCACTAATTAA 777 0.4801 MPTQPDSPNTLTQMFQNIFSDNSNIMLAAIISLLLVILFVLLLHLYAKWFLAQAQAQAHARRRRRRRRTTVTVSDVLGPARFHHFHGFNIEDSSPLSTKGLDSSTIRAIPLFIYEHNRANEDEELDCVICLSAFEGGEVGRCLPKCGHGFHVECIDMWLSSHSNCPICRAPIVVNVLESDSSQVVSSRDHGDEYGGSDFEIVVDAGSDESRESETGSGNGNGNANGGARTSVSVSETSFSFFGCSLERMLGKVFPSTN* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00980 258 CDD RING-H2_EL5-like 126 169 - -
Phac6g00980 258 MobiDBLite consensus disorder prediction 207 230 - -
Phac6g00980 258 SMART ring_2 127 168 IPR001841 -
Phac6g00980 258 Pfam Ring finger domain 126 169 IPR001841 -
Phac6g00980 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 174 IPR013083 -
Phac6g00980 258 MobiDBLite consensus disorder prediction 212 230 - -
Phac6g00980 258 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 180 - -
Phac6g00980 258 FunFam RING-H2 finger protein ATL1 88 174 - -
Phac6g00980 258 SUPERFAMILY RING/U-box 107 175 - -
Phac6g00980 258 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00980 Phac-Chr6 13878613 13879790 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00980 17 238 Rapid Response to Elicitors AT3G16720 32.432 2.30e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00980 - - pvu:PHAVU_006G070000g 436.417