Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac6g00965 ATGTCCATCCACTATTCCCCGCCCTCGCCGCCCTCCCTCCAATCCATCCGCCGCTCCCTCTCCAATATCTCCTCCCCGCCGCCCGACCACCGCCCCTTCGACACCCCCCGTCGCTTCGCCGCCTTCGCCCACCGCCTCTCCCACCTCCTCATATTCTCACTTCCTCAATCTACCCCCGTCCACACCGCTCTCAAGGGACTCGCCGCCGAGCTCTCCAAGGCCGCCGAAACCCTCTCAGTCTACAACAACGGCAGCAAAATTATCGTCCTCGTCAACTGCAAATCCCTCTGCTCCTCCCTCCAAAAACGAGCCGTGGCCATTGCCTCCTGGCTCGCACTCCTCGCTTCCGCTCTCCCCGCCGGAGGCGGCGACGACGACCTCCGCAAGAAGGTCTCCGACCTCGCTAGAGACATGAAGCTCGCCCAGTTCAGAGTCTCAGAGAACGAAGAGAGGGTTTGGTGCACGCTGGAAAAGGAAGGAGATGGGAGAGACAGCAGCAAAGCGGTGCAAAGTGGTATCGTCATGGATTTGGCTCGTGCTTTGGGGTTCGACCCTGGTGACCGTGCTGAGTTTTGTAACCAGGTGAAGCTCTTCAAAGGTGATCCTTTTAGATCCCATTCTGTGTCTGAGAGAAGGGTATTGGTGTCCTTGGAGAGAATTCTTTCTAACTGGTCTGGGGAGCCTGTCACTGTGACCCCCAATTGGGACTTTGAAATTGCTGAAGATGCTGCTGCTCCTGTTTTTCCATTTAAGAGTTTTCTTTGCCCCTTGACCAAGGAAGTCATGAGGGATCCTGTGGTTGTTCTGGAGTCCTCTCAGGCCTATGAGAGGGCTGCTATTGAGTACTGGTTTGAACGGTGCATACAAGATGGCCGTGAACCCACTTGTCCGGTTACTGGCACTGTTCTTAAGTCCTTGGAGCTGAAGCCTAATGTTGGGTTGGCTGGGGCAATTGAAGAGTGGGTTGGCAGGGTTGTCGATTATCAAATCAAATCTGCTGTGCAGTATCTGAGCGAGGAACCCTTGTCTGTTGATCATGTTGAGCGTGCTCTGGATCATGTTTATAAGGTTTCTGAAGAGCATCCCACTAGAAGATACATAATCAGAAACGCTGGTGCTGTGCTATTAATAGTAACTGTGCTCAGTAATAACTCCAAAACTATTGGATCACGTTTGAGAAGCAAAGCTCTAACGACTTTACTTAGCATGGCCAAGGATGAAGAAAGCAGGAAAATAATGCTGGGACGGGGTATCAATAGATTGGCCGTACATAGTCTTATTGGGAGCTCTGCGAAGGAGAGAGAATATGCTACCAAGTTATTACTAGAATTCTGCAATGATGAAGATTGTTGTGCAAGAATTGCATCAGAAAAAGGTGCTTTAGTTCTTCTCTCAAGTATAGCAGGAAATATGGAGTATCCGTCTTTGTCAAAATTAGCTGAGGAAGTCTTGAGGCGGATGGAGAGGGTAGAGGATAATGTTCAATGTTTGGCAGCAGCTGGAAGATTTGGACCATTGATTTCACGGTTACATGATGGTTCTGTTGGTGTAAAGATAGAGATGGCTTCTCTGGTTGGAAGGATGACCTTGACAAATAGCTGTAAAGAACAAATTGCAAGGCAAGGTGCCAGAGTATTTGTCGAACTTTTGTCTAATCAAGAAGGAAGGGAACCGAGTCTGCAAGCATTGTATAATTTGTCAGGATTAGATGGCAATGCGACCATCCTTATTGAGTCTTCAGTCCTTCCATCTCTTACAGAAGTTTTATTTGATAAGCAGGATCCATCTCATGAGCTGAAGTCATTGGCTGCTTCAACAATTGCGAATATTGTATCTAAGCCAGGGCATTGGGAATTAGCATCTGCTGATAATGATGGAAACCCAATGCAGTCAGAAATTATTGTTTATACACTTTTGGGGCTTTTGAACTGTCTGCCCTCTCAGTGTCAAGCGATAGTTCTTCGCATTCTTTGTGGTATTACGTTATCTCCTCAAGCATCAGAGTTAGTAGCAAGTCATATCACGTATAAGGGTGGCTTTGGAACGGTCATACCATTTCTGGAACATCCAGAAGTTGAACACAGAGTGTTTGCTTTTAAGCTTACAAGACTACTATCTGAATGGTTTAGTCAATTCATTGCAAATGAGTTGAGACTTTCAAACAAACTTCCTATACTCAAAGAAAAACTGTTAAATAACCAATCTACGAGTGATGAGAGATCAGAGGCAGCACAGATACTTGCCAACATTTCCCTCTCAGAAGGTGAAATACAGACACTTTTAGGAGGTAATTTTGTGGAATGGACTGCTGTTACTCTCAAGAACCAGCTGCGTGCTTCCAATGCAAGGTCTTCTCAGACTGCGGCTGGCATGCAGGAAGGTCTTATAGGTCTCTTGCTTCACTTCACAAGAAACCTTGATCAAGAAACTCTCAATATAATTAGAGAAAATCACCTTATGGCTATTTTCTGTGAGCAGCTGGATTATAGTTCAAAACCTAAGGTAAAACGACTAGCTGCCATTGGATTGAAAAACTTGTCAGAACTTGGAAGGTCGGATTCTGTTAGGGACTCTAAACTACCATCTTCTAGTGGATTCTGTTCCTCCCTTGTGCTTGTGTGTGGGAGAGCCTCTAGTCAACCTTCCACGTGCCCCATTCACAACCTTCCATGCAATGAAGATAGTCAGTTGTGCCTGCTCAAGAGCAGAAGTATCAAACCCCTGGTTGATATCCTCAATGACAGTGACACCGATGTTCAGCTAGCTGCAGTGGATGCACTTTCTACTCTAGTACTAGATCACACATCTCGCAGTTTCAAAAGAGTTGTTGATGAGCTTGAACATTTGGGTGCAGTTGATGCTCTTACCACTCTTTTTACAGAAGTTAGATCTGAGGAGCTTCGGGAGAAGGCAATTTGGATGATCGAAAAGATATTGAGAGTGGAAAATATCAGCAATCGGCATGCACTCAATCATTCTCTTGTGAGAGCTTTGGTTGAAGCCTTTAAGCATGGCAATACCAAGACAAGGAAACATGCTCAAGATGCTCTTACCCTCCTAAAGCAGTTATCCGGAGTTAGTGGAAAGACATCAAGTCAAACTCGAGTAAAGAGATAG 3117 0.4613 MSIHYSPPSPPSLQSIRRSLSNISSPPPDHRPFDTPRRFAAFAHRLSHLLIFSLPQSTPVHTALKGLAAELSKAAETLSVYNNGSKIIVLVNCKSLCSSLQKRAVAIASWLALLASALPAGGGDDDLRKKVSDLARDMKLAQFRVSENEERVWCTLEKEGDGRDSSKAVQSGIVMDLARALGFDPGDRAEFCNQVKLFKGDPFRSHSVSERRVLVSLERILSNWSGEPVTVTPNWDFEIAEDAAAPVFPFKSFLCPLTKEVMRDPVVVLESSQAYERAAIEYWFERCIQDGREPTCPVTGTVLKSLELKPNVGLAGAIEEWVGRVVDYQIKSAVQYLSEEPLSVDHVERALDHVYKVSEEHPTRRYIIRNAGAVLLIVTVLSNNSKTIGSRLRSKALTTLLSMAKDEESRKIMLGRGINRLAVHSLIGSSAKEREYATKLLLEFCNDEDCCARIASEKGALVLLSSIAGNMEYPSLSKLAEEVLRRMERVEDNVQCLAAAGRFGPLISRLHDGSVGVKIEMASLVGRMTLTNSCKEQIARQGARVFVELLSNQEGREPSLQALYNLSGLDGNATILIESSVLPSLTEVLFDKQDPSHELKSLAASTIANIVSKPGHWELASADNDGNPMQSEIIVYTLLGLLNCLPSQCQAIVLRILCGITLSPQASELVASHITYKGGFGTVIPFLEHPEVEHRVFAFKLTRLLSEWFSQFIANELRLSNKLPILKEKLLNNQSTSDERSEAAQILANISLSEGEIQTLLGGNFVEWTAVTLKNQLRASNARSSQTAAGMQEGLIGLLLHFTRNLDQETLNIIRENHLMAIFCEQLDYSSKPKVKRLAAIGLKNLSELGRSDSVRDSKLPSSSGFCSSLVLVCGRASSQPSTCPIHNLPCNEDSQLCLLKSRSIKPLVDILNDSDTDVQLAAVDALSTLVLDHTSRSFKRVVDELEHLGAVDALTTLFTEVRSEELREKAIWMIEKILRVENISNRHALNHSLVRALVEAFKHGNTKTRKHAQDALTLLKQLSGVSGKTSSQTRVKR* 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac6g00965 1038 SUPERFAMILY ARM repeat 791 1020 IPR016024 -
Phac6g00965 1038 ProSiteProfiles U-box domain profile. 248 328 IPR003613 GO:0004842|GO:0016567
Phac6g00965 1038 SUPERFAMILY ARM repeat 329 467 IPR016024 -
Phac6g00965 1038 CDD RING-Ubox_PUB 253 308 IPR045210 -
Phac6g00965 1038 SMART Ubox_2 252 321 IPR003613 GO:0004842|GO:0016567
Phac6g00965 1038 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 324 IPR013083 -
Phac6g00965 1038 Gene3D - 879 1033 IPR011989 -
Phac6g00965 1038 SUPERFAMILY RING/U-box 251 322 - -
Phac6g00965 1038 Gene3D - 325 851 IPR011989 -
Phac6g00965 1038 Pfam U-box domain 253 322 IPR003613 GO:0004842|GO:0016567
Phac6g00965 1038 Coils Coil 480 500 - -
Phac6g00965 1038 SMART arm_5 569 612 IPR000225 GO:0005515
Phac6g00965 1038 SMART arm_5 892 932 IPR000225 GO:0005515
Phac6g00965 1038 SMART arm_5 361 405 IPR000225 GO:0005515
Phac6g00965 1038 SMART arm_5 807 848 IPR000225 GO:0005515
Phac6g00965 1038 SMART arm_5 939 980 IPR000225 GO:0005515
Phac6g00965 1038 SMART arm_5 531 568 IPR000225 GO:0005515
Phac6g00965 1038 MobiDBLite consensus disorder prediction 1 28 - -
Phac6g00965 1038 SUPERFAMILY ARM repeat 482 849 IPR016024 -
Phac6g00965 1038 MobiDBLite consensus disorder prediction 1 30 - -
Phac6g00965 1038 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 56 1028 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac6g00965 Phac-Chr6 13715517 13722332 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac6g00965 250 1027 U-box Gene Family AT1G20780 29.057 1.20e-83 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac6g00965 - - gmx:102659945 1759.19